View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2838_low_7 (Length: 407)
Name: NF2838_low_7
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2838_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 53491609 - 53491223
Alignment:
| Q |
12 |
atggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttaata |
111 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53491609 |
atggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgata |
53491510 |
T |
|
| Q |
112 |
ctcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491509 |
ctcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaa |
53491410 |
T |
|
| Q |
212 |
ggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgtt |
311 |
Q |
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| T |
53491409 |
ggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgtt |
53491310 |
T |
|
| Q |
312 |
gctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491309 |
gctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 53499204 - 53498819
Alignment:
| Q |
10 |
caatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttaa |
109 |
Q |
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| T |
53499204 |
caatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttga |
53499105 |
T |
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| Q |
110 |
tactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
53499104 |
tactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaatacgtgctgagttagattctagagatagctactctcctga |
53499006 |
T |
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| Q |
210 |
aaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttg |
309 |
Q |
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|| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||||| |
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| T |
53499005 |
aaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttg |
53498906 |
T |
|
| Q |
310 |
ttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
398 |
Q |
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||||||||||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
53498905 |
ttgctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 16070288 - 16069958
Alignment:
| Q |
12 |
atggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttaata |
111 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |
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| T |
16070288 |
atggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaaaacgttgatt |
16070189 |
T |
|
| Q |
112 |
ctcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaa |
211 |
Q |
| |
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| |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
16070188 |
gtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagataactattctcttgaaa |
16070090 |
T |
|
| Q |
212 |
ggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgtt |
311 |
Q |
| |
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| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| ||||||| | || || |
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| T |
16070089 |
gaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgttatattatt |
16069990 |
T |
|
| Q |
312 |
gctcttatattcttacatatgtcattttgctt |
343 |
Q |
| |
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|| ||| ||||||| ||||||||||| ||||| |
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| T |
16069989 |
gcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
219 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
257 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 45355163 - 45355440
Alignment:
| Q |
12 |
atggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttaata |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||| |
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| T |
45355163 |
atggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcctgtgccttacaaagatgctgata |
45355262 |
T |
|
| Q |
112 |
ctcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaa |
211 |
Q |
| |
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|||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | ||||| |||| |||||||| | |
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| T |
45355263 |
ctcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgccagagacaactattctcctggat |
45355361 |
T |
|
| Q |
212 |
ggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
290 |
Q |
| |
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|||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
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| T |
45355362 |
ggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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