View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2839_high_10 (Length: 351)
Name: NF2839_high_10
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 38398399 - 38398731
Alignment:
| Q |
18 |
accttaacttctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatatggtatgaatgtttttgatttagtcgaatggaagaa |
117 |
Q |
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| T |
38398399 |
accttaacttctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatatggtatgaatgtttttgatttagtcgaatggaagaa |
38398498 |
T |
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| Q |
118 |
gcaaaacatcacagaggtgtaccacaattggcagaagctggtaagcacactttaatctacttatccaaaacatcacaaaattgagtgaaatgcatctact |
217 |
Q |
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| T |
38398499 |
gcaaaacatcacagaggtgtaccacaattggcagaagctggtaag-acactttaatctacttttccaaaacatcacaaaattgagtgaaatgcatctatt |
38398597 |
T |
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| Q |
218 |
gttaacttgtcttatttttcttgtaccaatttatattgctatttttgttcttaacaatttttcctctttaattaatctgactacagaatcatgatagaca |
317 |
Q |
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| T |
38398598 |
gttaacttgtcttatttttcttgtaccaatttatattgctatttttgttcttaacaatttttcctctttaattaatctgactacagaatcatgatagaca |
38398697 |
T |
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| Q |
318 |
actatggaagttaggaacactgccacctggtctt |
351 |
Q |
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| T |
38398698 |
actatggaagttaggaacactgccacctggtctt |
38398731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 56069923 - 56069715
Alignment:
| Q |
18 |
accttaacttctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatatggtatg----aatgtttttgatttagtcgaatgga |
113 |
Q |
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| T |
56069923 |
acctcaacttctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatgga |
56069824 |
T |
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| Q |
114 |
agaagcaaaacatcacagaggtgtaccacaattggcagaagctggtaagcacactttaatctacttatccaaaacatcacaaaattgagtgaaatgcatc |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||| | |||||||||||| ||||||||| |
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| T |
56069823 |
agaagcaaaacatcacagaggtgtaccacaaatggcagaaactggtaagcacactttaatttacttttccaaaacttgacaaaattgagttaaatgcatc |
56069724 |
T |
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| Q |
214 |
tactgttaa |
222 |
Q |
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| T |
56069723 |
tgctgttaa |
56069715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 56069685 - 56069608
Alignment:
| Q |
274 |
atttttcctctttaattaatctgactacagaatcatgatagacaactatggaagttaggaacactgccacctggtctt |
351 |
Q |
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| T |
56069685 |
atttttcctctctaattaatccgactacagaatcatgatagacaattatggaaattaggaacactgccacctggtctt |
56069608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 10170528 - 10170667
Alignment:
| Q |
23 |
aacttctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatatggtatgaatgtttttgatttagtcgaatggaagaagcaaa |
122 |
Q |
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|||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||| || || |||||||| |||||||||||| ||||||||| ||||| |
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| T |
10170528 |
aacttctcaaatcctcttattgcaaagaattttgatcctcatgcttgtgggtgggcctacggaatgaatgtatttgatttagtccaatggaagaggcaaa |
10170627 |
T |
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| Q |
123 |
acatcacagaggtgtaccacaattggcagaagctggtaag |
162 |
Q |
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| T |
10170628 |
agatcacagaggtgtaccacaactggcagaatttggtaag |
10170667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 10170992 - 10171041
Alignment:
| Q |
301 |
cagaatcatgatagacaactatggaagttaggaacactgccacctggtct |
350 |
Q |
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| T |
10170992 |
cagaatcatgatagacaactgtggaagttaggaacactgccaccaggtct |
10171041 |
T |
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