View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2839_high_2 (Length: 537)

Name: NF2839_high_2
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2839_high_2
NF2839_high_2
[»] chr8 (6 HSPs)
chr8 (256-523)||(5656919-5657186)
chr8 (17-198)||(5656680-5656860)
chr8 (256-482)||(5718661-5718884)
chr8 (256-482)||(5686521-5686742)
chr8 (18-126)||(5686149-5686257)
chr8 (18-126)||(5718296-5718404)
[»] chr4 (1 HSPs)
chr4 (21-85)||(106808-106872)
[»] scaffold0013 (1 HSPs)
scaffold0013 (21-83)||(88605-88667)
[»] chr3 (1 HSPs)
chr3 (450-480)||(17036439-17036469)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 256 - 523
Target Start/End: Original strand, 5656919 - 5657186
Alignment:
Q  256 gcaagtaagttgatctaggttatcaaaaccattttcatattatttataacaagatggaaaactgccatggtaaatttgacatgctctgctaacttttgag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5656919 gcaagtaagttgatctaggttatcaaaaccattttcatattatttataacaagatggaaaactgccatggtaaatttgacatgctctgctaacttttgag 5657018  T
Q  356 gaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttatttttaagttct 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5657019 gaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttatttttaagttct 5657118  T
Q  456 tgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaaatccgcctttg 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5657119 tgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaaatccgcctttg 5657186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 5656680 - 5656860
Alignment:
Q  17 aaatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgccaaaacataaataagaacttaattaaagataca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5656680 aaatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgccaaa-cataaataagaacttaattaaagataca 5656778  T
Q  117 aaaataataaatggaagtatatacaagtttattttttctctgtagacaaagtggtaagaaccacatataactcactgtcaaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5656779 aaaataataaatggaagtatatacaagtttattttttctctgtagacaaagtggtaagaaccacatataactcactgtcaaa 5656860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 256 - 482
Target Start/End: Original strand, 5718661 - 5718884
Alignment:
Q  256 gcaagtaagttgatctaggttatcaaaaccattttcatattatttataacaagatggaaaactgccatggtaaatttgacatgctctgctaacttttgag 355  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||    
T  5718661 gcaagtaagttggtctaggttatcaagaccattttcattttatttatcacaagatggaaaaccgccaaggtaaatttgacatgttctgctaacttttgag 5718760  T
Q  356 gaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttatttttaagttct 455  Q
    || ||||||||||||||||   |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  5718761 gatcaaaagtagcagctaa---aacactttctgctgcaaggcataactatattatatgaacttcaattatgaatcactaattactttctttttaagttct 5718857  T
Q  456 tgaaatcatttttaaatgagtttttaa 482  Q
    |||||||||||||||||||||||||||    
T  5718858 tgaaatcatttttaaatgagtttttaa 5718884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 256 - 482
Target Start/End: Original strand, 5686521 - 5686742
Alignment:
Q  256 gcaagtaagttgatctaggttatcaaaaccattttcatattatttataacaagatggaaaactgccatggtaaatttgacatgctctgctaacttttgag 355  Q
    |||||||||||| ||||||||||||| ||||||| ||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||    
T  5686521 gcaagtaagttggtctaggttatcaagaccattt-cattttatttatcacaagatggaaaaccgccaaggtaaatttgacatgttctgctaacttttgag 5686619  T
Q  356 gaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttatttttaagttct 455  Q
    || ||||||||||||||||   |||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  5686620 gatcaaaagtagcagctaa---aacactttctgctgcaag-cataactatattatatgaacttcaattatgaatcactaattactttctttttaagttct 5686715  T
Q  456 tgaaatcatttttaaatgagtttttaa 482  Q
    |||||||||||||||||||||||||||    
T  5686716 tgaaatcatttttaaatgagtttttaa 5686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 5686149 - 5686257
Alignment:
Q  18 aatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgccaaaacataaataagaacttaattaaagatacaa 117  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  5686149 aatatatctctaaacatggcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaaaacataaataagaacttaattaaagatacaa 5686248  T
Q  118 aaataataa 126  Q
    |||||||||    
T  5686249 aaataataa 5686257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 5718296 - 5718404
Alignment:
Q  18 aatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgccaaaacataaataagaacttaattaaagatacaa 117  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  5718296 aatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaaaacataaatacgaacttaattaaagatacaa 5718395  T
Q  118 aaataataa 126  Q
    |||||||||    
T  5718396 aaataataa 5718404  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 106872 - 106808
Alignment:
Q  21 atatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgcca 85  Q
    |||||||||||||| | |||||||| ||| || ||||||||||||||||| |||| |||||||||    
T  106872 atatctctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgatttcctgcca 106808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 88605 - 88667
Alignment:
Q  21 atatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgc 83  Q
    |||| ||||||||| | |||||||| ||| || ||||||||||||||||| ||||||||||||    
T  88605 atatttctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgagttcctgc 88667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 480
Target Start/End: Complemental strand, 17036469 - 17036439
Alignment:
Q  450 agttcttgaaatcatttttaaatgagttttt 480  Q
    |||||||||||||||||||||||||||||||    
T  17036469 agttcttgaaatcatttttaaatgagttttt 17036439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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