View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2839_high_9 (Length: 353)
Name: NF2839_high_9
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 36972 - 36720
Alignment:
| Q |
1 |
atcatgccaataactgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaacgttagaacacatactgttttca |
100 |
Q |
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| T |
36972 |
atcatgccaataactgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaacgttagaacacatactgttttca |
36873 |
T |
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| Q |
101 |
tgtggcctaaaacctggaaggaaacagcagaaaagcggccgatgcaaaggtactggctcacattgcaaaatacagctagcgagcatgaaagaagaatgca |
200 |
Q |
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| T |
36872 |
tgtggcctaaaacctggaaggaaacagcagaaaagcggccgatgcaaaggtactggctcacattgcaaaatacagctagggagcatgaaagaagaatgca |
36773 |
T |
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| Q |
201 |
taactgtagaggttaaagaaaaaagattaactgagtaatctaacactattttt |
253 |
Q |
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| T |
36772 |
taactgtagaggttaaagaaaaaagattaactgagtaatctaacactattttt |
36720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 36685 - 36637
Alignment:
| Q |
288 |
gccaactagagttaataggggaacttacaaaggcaccgaaagacatctt |
336 |
Q |
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| T |
36685 |
gccaactagagttaataggggaacttacaaaggcaccgaaagacatctt |
36637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 8675374 - 8675549
Alignment:
| Q |
23 |
ccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaacgttagaacacatactgttttcatgtggcctaaaacctggaagga |
122 |
Q |
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| T |
8675374 |
ccattcccatgatgttcttgaaagtgagctctgaatcgaataacagccaccccaaagtcagaacacataatgttttcatgtggcctaaaacctggaagga |
8675473 |
T |
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| Q |
123 |
aacagcagaaaagcggccgatgcaaaggtactggctcacattgcaaaatacagctagcgagcatgaaagaagaatg |
198 |
Q |
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||| || || ||||| || ||||| ||||||||||| ||||| ||||| ||||||| | |||||||||||||||| |
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| T |
8675474 |
aactgctgagaagcgcccaatgcagaggtactggcttacattacaaaacacagctaaggtgcatgaaagaagaatg |
8675549 |
T |
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