View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2839_low_1 (Length: 843)
Name: NF2839_low_1
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 40802395 - 40802081
Alignment:
| Q |
7 |
ggacatcatcaatgggnnnnnnnatcggttagggaccaccacctaatagctaccccaatattgagatgaaaatagtgggaggttgttaagaaggggaagc |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40802395 |
ggacatcatcaatgggtttttttatcggttagggaccaccacctaatagctaccccgatattgagatgaaaatagtgggaggttgttaagaaggggaagc |
40802296 |
T |
|
| Q |
107 |
tatacgtacaagacccctctctcttctcatttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40802295 |
tatacgtacaagacccctctctcttctcatttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttagg |
40802196 |
T |
|
| Q |
207 |
ttctttgaacatcataaagttttcgagaaatgagtcatatttgttaagaagctaggactgtccttgaacatgcacaattgcttatacattatacatacac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40802195 |
ttctttgaacatcataaagttttcgagaaatgagtcatatttgttaagaagctaggactgtccttgaacatgcacaattgcttatacattatacatacac |
40802096 |
T |
|
| Q |
307 |
aaactataggctgag |
321 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40802095 |
aaactataggctgag |
40802081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 351 - 661
Target Start/End: Complemental strand, 40802051 - 40801744
Alignment:
| Q |
351 |
tttagatctcgagagagtaattttttcaacttagatctaactctctccaccattgttgcacgtacca-tat-atacagctgttatagagaatccaagtcc |
448 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
40802051 |
tttagatcttgagagagtaattttctcaacttagatctaactctctccacc-ttgttgcacgtaccaataccatacagctgttatagagaatccaagtcc |
40801953 |
T |
|
| Q |
449 |
attatattgatgttaaaaatgagagagagatcgataagttatatatattagagcaaagccagtgatcttaccctttgatcggcgtcggggcagccaacaa |
548 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801952 |
attatattgatgttaaaaatgagagaga--tcgataagttatatatattagagcaaagctagtgatcttaccctttgatcggcgtcggggcagccaacaa |
40801855 |
T |
|
| Q |
549 |
gactgcttacattacattcgtgtacaaacagcttcaatgaagtttatcataataaccaacatggcattcatctgcatatgcatctgcacctagcccttgc |
648 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801854 |
gactggttacattacattc--gtacaaacagcttcaatgaagtttatcataataaccaacatggcattcatctgcatatgcatctgcacctagcccttgg |
40801757 |
T |
|
| Q |
649 |
tccttcctcatac |
661 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40801756 |
tccttcctcatac |
40801744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 725 - 831
Target Start/End: Complemental strand, 40801680 - 40801574
Alignment:
| Q |
725 |
cagacgcagccagggaaagtgcaggtgcaaatgcagataaaagctacatattggaatcaacatatttatttatgtgaatgagttccacatgaatgaaggg |
824 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801680 |
cagacgcagccagggaaagtgcaggtgcaaatgcagataaaagctacatattggaatcaacatatttatttatgtgaatgagttccacatgaatgaaggg |
40801581 |
T |
|
| Q |
825 |
gatatat |
831 |
Q |
| |
|
||||||| |
|
|
| T |
40801580 |
gatatat |
40801574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University