View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2839_low_11 (Length: 372)

Name: NF2839_low_11
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2839_low_11
NF2839_low_11
[»] chr3 (9 HSPs)
chr3 (1-336)||(24614204-24614539)
chr3 (1-336)||(24116835-24117170)
chr3 (1-329)||(24109128-24109456)
chr3 (1-360)||(23692739-23693098)
chr3 (1-360)||(23711179-23711538)
chr3 (1-360)||(23729635-23729994)
chr3 (1-360)||(23748090-23748449)
chr3 (1-336)||(23689305-23689640)
chr3 (1-336)||(24061542-24061877)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 24614539 - 24614204
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24614539 atataaatataatcagccatgtattcaacatcgtaaacgccaaccgcacttctttgttcatacttggaagccagcaacaatgaggagagaccgatgagtt 24614440  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24614439 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 24614340  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24614339 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctaccttaaacccttttgagttggccctaatctgagactcttcaagatga 24614240  T
Q  301 tagaacttatagagatcatcatcataatcagtaaac 336  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24614239 tagaacttatagagatcatcatcataatccgtaaac 24614204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 24116835 - 24117170
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24116835 atataaatataatcagccatgtattcaacatcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaaagaggagagaccgatgagtt 24116934  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24116935 taagtttatccactgtcgtcacttcaaacttgattttcgaaagaacacgatcgagtacgttgacacaaagatagagggtttctggcatgagtttttgttc 24117034  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24117035 atagtgtgtttgtattaaccaatctacaacattctttctcatttgaaaatctaccttaaacccttttgagttggccctaatctgagactcttcaagatga 24117134  T
Q  301 tagaacttatagagatcatcatcataatcagtaaac 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  24117135 tagaacttatagagatcatcatcataatcagtaaac 24117170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 24109128 - 24109456
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    |||||||| ||||||||||||  ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24109128 atataaatgtaatcagccatgccttcgatgtcataaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagacccatgagtt 24109227  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    | ||||||||||||||||| |||||||||| |||||| |||||||  ||||| |||||||||||||||||||| |||||||||||||||||||||||||     
T  24109228 ttagtttatccattgtcgtgacttcaaactcgattttggaaagaaatcgatcaagtatgttgacacaaagatagagggtttctggcatgagtttttgttt 24109327  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
    ||||||||||||||| ||||||||||| ||| |  |||||||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||    
T  24109328 atagtgtgtttgtatcaaccaatctacgacaatttttctcattagaaaatctaccttaaacccttttgagtttgccctaatttgagactcttcaatatga 24109427  T
Q  301 tagaacttatagagatcatcatcataatc 329  Q
    || ||||| |||||||||||||| |||||    
T  24109428 taaaacttgtagagatcatcatcgtaatc 24109456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 23693098 - 23692739
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23693098 atataaatataatcagccaagtattcaacgtcgtaaacaccaaccgctcttctttgttcatacttggaagccaacaacaatgaagagagaccgataagtt 23692999  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    ||||||| ||||||||| | |||||||| |||||||| ||||| ||||| || || ||||||||||| ||||| || ||||| ||||| | ||||||||     
T  23692998 taagtttctccattgtcttgacttcaaaattgattttggaaagtacgcggtcaaggatgttgacacagagataaagcgtttccggcatcaatttttgttg 23692899  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
     |||||||||||||| ||||||||||| |||||| |||||| |||| |||||| ||| | ||| ||||||||  |  | || ||||||||||||||||||    
T  23692898 gtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttgagcccgtttgagtttccgttgatttgagactcttcaagatga 23692799  T
Q  301 tagaacttatagagatcatcatcataatcagtaaacnnnnnnncattggagatgagtttt 360  Q
    ||  | |  || |||||||||||||||||| || ||       |||||||||||||||||    
T  23692798 taatattggtatagatcatcatcataatcactatactttttttcattggagatgagtttt 23692739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 23711538 - 23711179
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23711538 atataaatataatcagccaagtattcaacgtcgtaaacaccaaccgctcttctttgttcatacttggaagccaacaacaatgaagagagaccgataagtt 23711439  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    ||||||| ||||||||| | |||||||| |||||||| ||||| ||||| || || ||||||||||| ||||| || ||||| ||||| | ||||||||     
T  23711438 taagtttctccattgtcttgacttcaaaattgattttggaaagtacgcggtcaaggatgttgacacagagataaagcgtttccggcatcaatttttgttg 23711339  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
     |||||||||||||| ||||||||||| |||||| |||||| |||| |||||| ||| | ||| ||||||||  |  | || ||||||||||||||||||    
T  23711338 gtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttgagcccgtttgagtttccgttgatttgagactcttcaagatga 23711239  T
Q  301 tagaacttatagagatcatcatcataatcagtaaacnnnnnnncattggagatgagtttt 360  Q
    ||  | |  || |||||||||||||||||| || ||       |||||||||||||||||    
T  23711238 taatattggtatagatcatcatcataatcactatactttttttcattggagatgagtttt 23711179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 23729994 - 23729635
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23729994 atataaatataatcagccaagtattcaacgtcgtaaacaccaaccgctcttctttgttcatacttggaagccaacaacaatgaagagagaccgataagtt 23729895  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    ||||||| ||||||||| | |||||||| |||||||| ||||| ||||| || || ||||||||||| ||||| || ||||| ||||| | ||||||||     
T  23729894 taagtttctccattgtcttgacttcaaaattgattttggaaagtacgcggtcaaggatgttgacacagagataaagcgtttccggcatcaatttttgttg 23729795  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
     |||||||||||||| ||||||||||| |||||| |||||| |||| |||||| ||| | ||| ||||||||  |  | || ||||||||||||||||||    
T  23729794 gtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttgagcccgtttgagtttccgttgatttgagactcttcaagatga 23729695  T
Q  301 tagaacttatagagatcatcatcataatcagtaaacnnnnnnncattggagatgagtttt 360  Q
    ||  | |  || |||||||||||||||||| || ||       |||||||||||||||||    
T  23729694 taatattggtatagatcatcatcataatcactatactttttttcattggagatgagtttt 23729635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 23748449 - 23748090
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23748449 atataaatataatcagccaagtattcaacgtcgtaaacaccaaccgctcttctttgttcatacttggaagccaacaacaatgaagagagaccgataagtt 23748350  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    ||||||| ||||||||| | |||||||| |||||||| ||||| ||||| || || ||||||||||| ||||| || ||||| ||||| | ||||||||     
T  23748349 taagtttctccattgtcttgacttcaaaattgattttggaaagtacgcggtcaaggatgttgacacagagataaagcgtttccggcatcaatttttgttg 23748250  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
     |||||||||||||| ||||||||||| |||||| |||||| |||| |||||| ||| | ||| ||||||||  |  | || ||||||||||||||||||    
T  23748249 gtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttgagcccgtttgagtttccgttgatttgagactcttcaagatga 23748150  T
Q  301 tagaacttatagagatcatcatcataatcagtaaacnnnnnnncattggagatgagtttt 360  Q
    ||  | |  || |||||||||||||||||| || ||       |||||||||||||||||    
T  23748149 taatattggtatagatcatcatcataatcactatactttttttcattggagatgagtttt 23748090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 23689640 - 23689305
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||||||| || |||| ||||||||||||  |  ||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  23689640 atataaatataatcagccatgtactcgacgtggtaaacaccaacagcttttctttgttcatatttggaagccaacaacaacgaagagagaccgatgagtt 23689541  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    ||||||| ||||| ||| | |||||||| |||||||| ||||| || || || || ||||||||||| ||||| |  ||||| ||||| || ||||||||    
T  23689540 taagtttctccatcgtcttgacttcaaaattgattttggaaagtactcggtcaaggatgttgacacagagataaaacgtttccggcatcagcttttgttc 23689441  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
     |||||||||||||| ||||||||||| |||||| |||| |||||| |||||| ||| ||||| ||||||||  ||   || |||||||||||||| |||    
T  23689440 gtagtgtgtttgtatcaaccaatctacgacattctttctaatttgagaatctaccttgaacccgtttgagtttccctggatttgagactcttcaaggtga 23689341  T
Q  301 tagaacttatagagatcatcatcataatcagtaaac 336  Q
    || || || || |||||||||||||||||| |||||    
T  23689340 taaaatttgtatagatcatcatcataatcactaaac 23689305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 24061877 - 24061542
Alignment:
Q  1 atataaatataatcagccatgtattcaacgtcgtaaacaccaaccacacttctttgttcatacttggaagccaacaacaatgaggagagaccgatgagtt 100  Q
    ||||||||||||||||||||||| || |||| ||||||||||||  |  ||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  24061877 atataaatataatcagccatgtactcgacgtggtaaacaccaacagcttttctttgttcatatttggaagccaacaacaacgaagagagaccgatgagtt 24061778  T
Q  101 taagtttatccattgtcgtcacttcaaacttgattttcgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttc 200  Q
    ||||||| ||||| ||| | |||||||| |||||||| ||||| || || || || ||||||||||| ||||| |  ||||| ||||| || ||||||||    
T  24061777 taagtttctccatcgtcttgacttcaaaattgattttggaaagtactcggtcaaggatgttgacacagagataaaacgtttccggcatcagcttttgttc 24061678  T
Q  201 atagtgtgtttgtattaaccaatctacaacattcattctcatttgaaaatctatcttaaacccttttgagttggccctaatctgagactcttcaagatga 300  Q
     |||||||||||||| ||||||||||| |||||| |||| |||||| |||||| ||| ||||| ||||||||  ||   || |||||||||||||| |||    
T  24061677 gtagtgtgtttgtatcaaccaatctacgacattctttctaatttgagaatctaccttgaacccgtttgagtttccctggatttgagactcttcaaggtga 24061578  T
Q  301 tagaacttatagagatcatcatcataatcagtaaac 336  Q
    || || || || |||||||||||||||||| |||||    
T  24061577 taaaatttgtatagatcatcatcataatcactaaac 24061542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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