View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2839_low_12 (Length: 370)

Name: NF2839_low_12
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2839_low_12
NF2839_low_12
[»] chr4 (5 HSPs)
chr4 (19-359)||(23587363-23587703)
chr4 (19-366)||(23596208-23596555)
chr4 (48-197)||(54396650-54396799)
chr4 (53-199)||(9335681-9335827)
chr4 (53-182)||(30775484-30775613)
[»] chr7 (15 HSPs)
chr7 (28-366)||(8017036-8017374)
chr7 (25-230)||(8102871-8103076)
chr7 (28-299)||(39985853-39986124)
chr7 (47-182)||(8610143-8610278)
chr7 (53-199)||(13333246-13333392)
chr7 (58-194)||(8585501-8585637)
chr7 (47-199)||(8602200-8602352)
chr7 (53-284)||(8667651-8667882)
chr7 (59-182)||(17268177-17268300)
chr7 (70-176)||(8538285-8538391)
chr7 (53-199)||(10494164-10494310)
chr7 (53-197)||(8659595-8659739)
chr7 (151-284)||(8671335-8671468)
chr7 (64-199)||(3147515-3147650)
chr7 (76-199)||(7877523-7877646)
[»] chr2 (3 HSPs)
chr2 (53-199)||(16657307-16657453)
chr2 (58-197)||(17716485-17716624)
chr2 (109-197)||(12234977-12235065)
[»] chr1 (1 HSPs)
chr1 (53-197)||(4678350-4678494)
[»] chr6 (1 HSPs)
chr6 (58-184)||(11156507-11156633)
[»] chr8 (2 HSPs)
chr8 (64-137)||(42272433-42272506)
chr8 (64-173)||(42324520-42324629)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 23587703 - 23587363
Alignment:
Q  19 ataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtc 118  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23587703 ataagaacgttcttctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtc 23587604  T
Q  119 cagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagc 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23587603 cagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaagataagc 23587504  T
Q  219 ctctgcaatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23587503 ctctgcaatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcttccgctttgtagttcaccacgatcattggtttg 23587404  T
Q  319 tcagcagggccaggaatgaccttgaacggccacaatttcat 359  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23587403 tcagcagggccaggaatgaccttgaacggccacaatttcat 23587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 23596555 - 23596208
Alignment:
Q  19 ataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||||||||    
T  23596555 ataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtc 23596456  T
Q  119 cagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagc 218  Q
    ||||||||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| |||||    
T  23596455 cagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagc 23596356  T
Q  219 ctctgcaatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttg 318  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  23596355 ctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattggtttg 23596256  T
Q  319 tcagcagggccaggaatgaccttgaacggccacaatttcatctcactc 366  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23596255 tcagcagggccaggaatgaccttgaacggccacaatttcatgtcactc 23596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 54396650 - 54396799
Alignment:
Q  48 agctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagct 147  Q
    |||||||||||| | |||||||||||| |||||||||||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| ||||||    
T  54396650 agctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagct 54396749  T
Q  148 tgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 197  Q
    ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  54396750 tgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 54396799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 9335827 - 9335681
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 152  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||   ||| |||||| | || || |  ||    
T  9335827 tcttatcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcg 9335728  T
Q  153 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 199  Q
    ||| ||||| ||||||||||| ||||| || ||||||||||||||||    
T  9335727 ctgagaatcattgaagtaagctggcacggtaacaacggcattcttga 9335681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 30775484 - 30775613
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 152  Q
    |||| ||||| ||||| |||||||| || ||||| || |||||||| |||||||  ||||| || |||| |||| |||| |||||  | || ||||  ||    
T  30775484 tcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcg 30775583  T
Q  153 ctgtgaatcgttgaagtaagcaggcacagt 182  Q
    ||||| ||| ||||| ||||||||||||||    
T  30775584 ctgtgcatcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 28 - 366
Target Start/End: Complemental strand, 8017374 - 8017036
Alignment:
Q  28 ttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatga 127  Q
    |||||||| |||  ||||||||| || || ||||| || || |||||||| ||||| || || || || ||||||||||| ||||||||||| | |||||    
T  8017374 ttcttctcgccaacacttgtagcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatga 8017275  T
Q  128 caccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaat 227  Q
    |||||||||| ||||| ||||||||||| ||||| ||||||||||| || || || |||||||||||||| |  |||| ||| || ||||| || |||||    
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaat 8017175  T
Q  228 ctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagcaggg 327  Q
    |||   ||| || || || |||||||| || || || ||||| | ||||||||| |||||  | |||||||| ||  | |||||||| || ||| ||||     
T  8017174 ctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggcttttcaccagga 8017075  T
Q  328 ccaggaatgaccttgaacggccacaatttcatctcactc 366  Q
    |||| ||| ||||| || |||||||| ||||| ||||||    
T  8017074 ccagcaataaccttaaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 8102871 - 8103076
Alignment:
Q  25 acgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaa 124  Q
    |||||||||||||||  |||||| || || || |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||| |  ||||  |    
T  8102871 acgttcttctcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcga 8102970  T
Q  125 tgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgc 224  Q
    | ||||| |||||||| || ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| || ||   |||||||||||| || ||    
T  8102971 taacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaatggtgacaccaagataagcttcggc 8103070  T
Q  225 aatctc 230  Q
    ||||||    
T  8103071 aatctc 8103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 39985853 - 39986124
Alignment:
Q  28 ttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatga 127  Q
    |||||||| |||  ||| || |||||||| ||||||||||||||||| ||||||||||| || ||||| ||||||| ||  ||||| || || | ||| |    
T  39985853 ttcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataa 39985952  T
Q  128 caccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaat 227  Q
    | || ||||| || |||||||||||||| || || || ||||||||||| ||||| ||||| |||||||| || |  | |||||| || || || |||||    
T  39985953 ctccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaat 39986052  T
Q  228 ctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagtt 299  Q
    |||   ||| ||||| || ||||| ||||| |||||||| || | ||||| ||| || ||  ||||||||||    
T  39986053 ctcacgcatcttcattagcaccatggaagagatctcttcggcagcaaattccttatcttcacctttgtagtt 39986124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 8610143 - 8610278
Alignment:
Q  47 tagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagc 146  Q
    ||||| |||| | ||||||||| |||| ||| ||||| || |||||||| ||||| |  |  ||||| || |||||||||||||| ||||||||||| ||    
T  8610143 tagctctcttctgaagaccatatgcaagagccgcagccgttggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggc 8610242  T
Q  147 ttgacgctgtgaatcgttgaagtaagcaggcacagt 182  Q
    ||  ||||| ||||| || || ||||||||||||||    
T  8610243 tttccgctgagaatcattaaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 13333392 - 13333246
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 152  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || ||||  |  | ||| || |||| |||  |||| |||||| | || || |  ||    
T  13333392 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcg 13333293  T
Q  153 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 199  Q
    ||| ||||| ||||||||||| |||||||| ||||||||||||||||    
T  13333292 ctgagaatcattgaagtaagccggcacagtaacaacggcattcttga 13333246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 8585637 - 8585501
Alignment:
Q  58 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 157  Q
    ||||| ||||| |||||||| |||||||| |||||||| || || ||||  ||||| || |||| |||| |||| |||||  | || ||||  ||||| |    
T  8585637 tcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgag 8585538  T
Q  158 aatcgttgaagtaagcaggcacagttacaacggcatt 194  Q
    |||| ||||| |||||||||||||| ||||| |||||    
T  8585537 aatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 8602200 - 8602352
Alignment:
Q  47 tagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagc 146  Q
    ||||| |||| | ||| ||||| |||| |||||| ||||| || ||||| || || | ||  |||||||| |||| |||| |||| ||||||||||| ||    
T  8602200 tagctctcttttgaaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggc 8602299  T
Q  147 ttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 199  Q
    ||  ||||| ||||| || || ||||| |||||||| ||||| ||||||||||    
T  8602300 ttttcgctgagaatcattaaaataagccggcacagtaacaactgcattcttga 8602352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 284
Target Start/End: Original strand, 8667651 - 8667882
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 152  Q
    |||| ||||| ||||| |||||||| || |||||||||||||| || || |  |  ||||| ||||||| |||   ||| |||||| | || || |  ||    
T  8667651 tcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcg 8667750  T
Q  153 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccata 252  Q
    ||| ||||| ||||||||||| |||||||| |||||||||||||||| ||  |  || ||||| ||||| |||| |||   ||| ||  |||| ||||||    
T  8667751 ctgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccata 8667850  T
Q  253 gaagatatctcttcagcggaaaattgcttctc 284  Q
    |||||||| || |||||  |||| ||||||||    
T  8667851 gaagatatttcctcagcacaaaagtgcttctc 8667882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 17268177 - 17268300
Alignment:
Q  59 caagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtga 158  Q
    |||| ||||| |||||||| |||||||| |||||||| || |   |||| ||||| || |||| ||||||||| |||||| | || ||||  ||||| ||    
T  17268177 caaggccatatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgaga 17268276  T
Q  159 atcgttgaagtaagcaggcacagt 182  Q
    ||||||||||||||| || |||||    
T  17268277 atcgttgaagtaagccgggacagt 17268300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 8538285 - 8538391
Alignment:
Q  70 gcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagt 169  Q
    |||| ||||||||| ||||||||||| || || | ||  |||||||| |||| ||||||||| |||||||| || |||   ||||||||||| ||||| |    
T  8538285 gcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaat 8538384  T
Q  170 aagcagg 176  Q
    |||||||    
T  8538385 aagcagg 8538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 10494310 - 10494164
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 152  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||  |||| |||||  | ||||| |  ||    
T  10494310 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcg 10494211  T
Q  153 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 199  Q
     || ||||||||||||||||| |||||||| ||||| ||||||||||    
T  10494210 ttgagaatcgttgaagtaagccggcacagtaacaacagcattcttga 10494164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 8659595 - 8659739
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaa-cacattgagtccagaaatgacaccggcatcttttgtagcttgac 151  Q
    |||| |||| |||||| |||||||| |||||||||||||||||||| | ||| ||  ||||| || |||| |||| |||||| |||| | || ||||  |    
T  8659595 tcttgtcaaaaccatatgcaatagctgcagcagtaggttcattaatta-tctgaatgacattaaggccagcaatggcaccggaatctatggtggcttttc 8659693  T
Q  152 gctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 197  Q
    |||| ||||| ||||| || |||||||| || ||||| ||||||||    
T  8659694 gctgagaatcattgaactatgcaggcactgtaacaacagcattctt 8659739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 8671468 - 8671335
Alignment:
Q  151 cgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaacca 250  Q
    ||||| ||||| ||||||||||| ||||| || |||||||||||||||| || ||   | ||||| ||||| |||| |||   ||| ||  |||| ||||    
T  8671468 cgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcacca 8671369  T
Q  251 tagaagatatctcttcagcggaaaattgcttctc 284  Q
    |||||||||| || |||||  |||||||||||||    
T  8671368 tagaagatatttcctcagcacaaaattgcttctc 8671335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 3147515 - 3147650
Alignment:
Q  64 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 163  Q
    ||||| |||||||| ||||||||||||||||| || || | ||  | ||| || |||| ||| ||||| |||||| |||| ||||  ||||| | ||| |    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgctttccgctgagcatcat 3147614  T
Q  164 tgaagtaagcaggcacagttacaacggcattcttga 199  Q
    |||| |||||||| || || ||||| ||||||||||    
T  3147615 tgaaataagcaggtacggtaacaactgcattcttga 3147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 7877646 - 7877523
Alignment:
Q  76 gcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcag 175  Q
    ||||||||||| ||||||||||| || | ||  |||||||| || | ||   |||| ||||||||||| ||||  || || ||||| ||||| ||||| |    
T  7877646 gcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccg 7877547  T
Q  176 gcacagttacaacggcattcttga 199  Q
    ||||||| ||||| ||||||||||    
T  7877546 gcacagtaacaactgcattcttga 7877523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 16657453 - 16657307
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 152  Q
    |||| ||||||||||| |||||||| ||||||||||||||||| |||||||  |  ||||| || ||||  ||| |||| |||||| | || ||||  ||    
T  16657453 tcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcg 16657354  T
Q  153 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 199  Q
    ||| ||||| ||||||||||| |||||||| ||||| ||||||||||    
T  16657353 ctgcgaatcattgaagtaagctggcacagtaacaacagcattcttga 16657307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 17716624 - 17716485
Alignment:
Q  58 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 157  Q
    |||| |||||||||||| || |||||||| || ||||||||||||||||  | ||| || |||| |||  |||| ||||  || |||||||| | ||| |    
T  17716624 tcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgag 17716525  T
Q  158 aatcgttgaagtaagcaggcacagttacaacggcattctt 197  Q
    ||   || ||||||||||| ||||| ||||||||||||||    
T  17716524 aaaaattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 12234977 - 12235065
Alignment:
Q  109 acattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 197  Q
    |||||||| |||| ||||||||| |||||| | || ||||  || || ||||| ||||| ||||||||||| || ||||| ||||||||    
T  12234977 acattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 4678494 - 4678350
Alignment:
Q  53 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 152  Q
    |||| |||| |||||| |||||||| ||| |||||||||| || || |||   |  ||||| ||||||| |||| |||| |||||| | |||||||  ||    
T  4678494 tcttgtcaaaaccatatgcaatagctgcaacagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 4678395  T
Q  153 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 197  Q
     || ||||| |||||||| ||||||||||| |||||| |||||||    
T  4678394 ttgagaatcattgaagtatgcaggcacagtaacaacgacattctt 4678350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 11156507 - 11156633
Alignment:
Q  58 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 157  Q
    ||||||||||| ||||| ||||| |||| ||| ||||| || |||| ||  |||||||| |||| ||| ||||| |||||||  || |  || || ||||    
T  11156507 tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtg 11156606  T
Q  158 aatcgttgaagtaagcaggcacagtta 184  Q
    | || || |||||||||||||||||||    
T  11156607 agtcattaaagtaagcaggcacagtta 11156633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 42272506 - 42272433
Alignment:
Q  64 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatc 137  Q
    ||||||||||| |||||||| || ||||||||||| |||||   |||||| |  |||| |||||||||||||||    
T  42272506 ccataagcaatggcagcagcggtgggttcattaatgattctagccacattcaaaccagcaatgacaccggcatc 42272433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 42324629 - 42324520
Alignment:
Q  64 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 163  Q
    ||||||||||| |||||||| |||||||| ||||| |||||   |||||| |  |||| ||||||||||||||| || || || || | ||| | ||| |    
T  42324629 ccataagcaatggcagcagcggtaggttcgttaatgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcat 42324530  T
Q  164 tgaagtaagc 173  Q
    ||||||||||    
T  42324529 tgaagtaagc 42324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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