View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2839_low_15 (Length: 342)
Name: NF2839_low_15
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 37041214 - 37040901
Alignment:
| Q |
13 |
catcaccaacctaaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacctctgcccacaaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37041214 |
catcaccaacctaaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacttctgcccacaaaa |
37041115 |
T |
|
| Q |
113 |
catttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttgcaaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041114 |
catttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttgcaaata |
37041015 |
T |
|
| Q |
213 |
ttctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041014 |
ttctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacc |
37040915 |
T |
|
| Q |
313 |
tacacaaaaacatg |
326 |
Q |
| |
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|||||||||||||| |
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| T |
37040914 |
tacacaaaaacatg |
37040901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 314
Target Start/End: Original strand, 36272645 - 36272863
Alignment:
| Q |
96 |
tacctctgcccacaaaacatttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcacct |
195 |
Q |
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| T |
36272645 |
tacctctgcccacaacacatttgggctagtatgagctttgatgaaataatcagttccccatttaattgcttccattacatgaccaagttcaccagcttca |
36272744 |
T |
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| Q |
196 |
tcaatttcttgcaaatattctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataatacc |
295 |
Q |
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||||||||||| | | || ||| ||| |||||| | |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
36272745 |
acaatttcttgcctaaactcaataacactccatgacaacattgtgacagtaaatgccattggtaaaccaaatttcacatgatcacctgcatcatagtacc |
36272844 |
T |
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| Q |
296 |
ctcctaccaaatccaccta |
314 |
Q |
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|||| |||||||| ||||| |
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| T |
36272845 |
ctccaaccaaatcaaccta |
36272863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 41915381 - 41915316
Alignment:
| Q |
225 |
ccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcata |
290 |
Q |
| |
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|||||| | |||||| |||||||||||||||||||| |||||||| |||| ||| ||||||||||| |
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| T |
41915381 |
ccatgacatcattgtaacagtaaatgccattggtaacccaaatttcacattatcccctgcatcata |
41915316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 28582400 - 28582488
Alignment:
| Q |
217 |
atagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaa |
305 |
Q |
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||||| ||||||| ||||||||| ||| | | |||||||||| ||||| || |||||||||||||||||||| |||||||| ||||| |
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| T |
28582400 |
atagccccccatgcaagcattgtgacactgtaagccattggtagcccaaacttcacatgatcacctgcatcatagtaccctcccaccaa |
28582488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 39419553 - 39419644
Alignment:
| Q |
225 |
ccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacctaca |
316 |
Q |
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|||||||||||| || |||||| ||||| || |||||||| || |||| ||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
39419553 |
ccatgaaagcatagtggtagtaaaagccataggaaaaccaaacttgacattgtcaccagcatcataataccctccaaccaaatcaacctaca |
39419644 |
T |
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