View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2839_low_19 (Length: 261)
Name: NF2839_low_19
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_19 |
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| [»] scaffold0263 (1 HSPs) |
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| [»] scaffold1457 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0263 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 14406 - 14572
Alignment:
| Q |
41 |
tgcaataatcaaagcttttttgggtcttatttagaagatgtat--caaactacagcaaggaacgacctagcaattccttagtttgataaatgacccgaat |
138 |
Q |
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| T |
14406 |
tgcaataattaaagtttttttgggtcttatttagaagatgtatatcaaactacagcaaggaacgtcatagccatcccttagtttgataaatgacccgaat |
14505 |
T |
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| Q |
139 |
aattaaacatagagatagtggatatgataagtttaattaccggctacatagagctagtaattaatta |
205 |
Q |
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| T |
14506 |
aattaaacatatagatagtggatattataagtttaattaccggctacatagagctagtaattaatta |
14572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1457 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold1457
Description:
Target: scaffold1457; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 770 - 634
Alignment:
| Q |
41 |
tgcaataatcaaagcttttttgggtcttatttagaagatgtatcaaactacagcaaggaacgacctagcaattccttagtttgataaatgacccgaataa |
140 |
Q |
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| T |
770 |
tgcaataatcaaagcttttttgggtcttatttagaagatgtatcaaactacagcaaggaacgacatagctatcccttagtttgataaatgacccgaataa |
671 |
T |
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| Q |
141 |
ttaaacatagagatagtggatatgataagtttaatta |
177 |
Q |
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| T |
670 |
ttaaacatatagatagtggatatgataagtttaatta |
634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 92600 - 92737
Alignment:
| Q |
70 |
tttagaagatgtat--caaactacagcaaggaacgacctagcaattccttagtttgataaatgacccgaataattaaacatagagatagtggatatgata |
167 |
Q |
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|||||||||||||| ||||||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
92600 |
tttagaagatgtatatcaaactacagcaaggaacgtcatagccatcccttagtttgataaatgacccgaataattaaacatatagatagtggatatgata |
92699 |
T |
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| Q |
168 |
agtttaattaccggctacatagagctagtaattaatta |
205 |
Q |
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|||| ||||||| ||||||||||||||||||||||||| |
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| T |
92700 |
agttcaattacccgctacatagagctagtaattaatta |
92737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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