View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2839_low_2 (Length: 684)
Name: NF2839_low_2
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 20 - 679
Target Start/End: Complemental strand, 45595935 - 45595276
Alignment:
| Q |
20 |
aatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaacttacagagagaatactacttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595935 |
aatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaacttacagagagaatactacttat |
45595836 |
T |
|
| Q |
120 |
tggaaaagaaagcacatcaatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggatacc |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595835 |
tggaaaagaaagcacatcgatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggatacc |
45595736 |
T |
|
| Q |
220 |
ctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595735 |
ctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
45595636 |
T |
|
| Q |
320 |
tagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595635 |
tagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcag |
45595536 |
T |
|
| Q |
420 |
gaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595535 |
gaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttg |
45595436 |
T |
|
| Q |
520 |
tacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctctctttc |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595435 |
tacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctctctttc |
45595336 |
T |
|
| Q |
620 |
tctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgcttct |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595335 |
tctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgcttct |
45595276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 146 - 319
Target Start/End: Complemental strand, 27151508 - 27151335
Alignment:
| Q |
146 |
agaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgct |
245 |
Q |
| |
|
|||| ||||| ||||||||| ||| |||||||| |||||||||||||||||||| |||| |||||||||||| || ||||||| || |||||||||||| |
|
|
| T |
27151508 |
agaacagaggtccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgct |
27151409 |
T |
|
| Q |
246 |
gcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
319 |
Q |
| |
|
|| || ||||| ||||||||||| ||||||||| ||||| ||||||| || ||||| || |||||||||||||| |
|
|
| T |
27151408 |
gctggagagatttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 411 - 577
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
411 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
510 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||| | || |||| |
|
|
| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
|
| Q |
511 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
577 |
Q |
| |
|
|||||||| ||| ||||| |||| |||||||| | || |||||||| ||||| ||||||||||| |
|
|
| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University