View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2839_low_20 (Length: 259)

Name: NF2839_low_20
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2839_low_20
NF2839_low_20
[»] chr4 (3 HSPs)
chr4 (14-150)||(23424702-23424842)
chr4 (1-150)||(39655548-39655700)
chr4 (14-68)||(39429640-39429694)
[»] chr2 (1 HSPs)
chr2 (14-150)||(20991696-20991836)
[»] chr5 (2 HSPs)
chr5 (1-150)||(9923619-9923771)
chr5 (14-150)||(1970010-1970149)
[»] chr3 (1 HSPs)
chr3 (1-150)||(43768425-43768577)
[»] chr1 (2 HSPs)
chr1 (4-150)||(50427812-50427962)
chr1 (1-65)||(14742047-14742111)
[»] chr8 (2 HSPs)
chr8 (1-150)||(7054483-7054633)
chr8 (17-68)||(42345812-42345863)
[»] chr7 (1 HSPs)
chr7 (149-188)||(32903997-32904036)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 23424842 - 23424702
Alignment:
Q  14 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatattccagatc 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||||||||    
T  23424842 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgagaatattccagatc 23424743  T
Q  110 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    | |||        ||||||||||||||||||||||||||||    
T  23424742 ttgagttttttttgccttatacgtaatagagcaatagaaaa 23424702  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39655700 - 39655548
Alignment:
Q  1 agaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgag 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    ||||||||||| |||||||||||  ||||    
T  39655700 agaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaataagaatgttcatgtccatgagaatattggtgaccctattgcatgag 39655601  T
Q  97 aatattccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    |||||||| ||||| |||        ||||||||||||||||||||||||||||    
T  39655600 aatattcccgatcttgag-ttcttttgccttatacgtaatagagcaatagaaaa 39655548  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 39429640 - 39429694
Alignment:
Q  14 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatgt 68  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39429640 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgt 39429694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 20991696 - 20991836
Alignment:
Q  14 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatattccagatc 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||||||||    
T  20991696 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgagaatattccagatc 20991795  T
Q  110 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    | |||        ||||||||||||||||||||||||||||    
T  20991796 ttgagttttttttgccttatacgtaatagagcaatagaaaa 20991836  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 9923771 - 9923619
Alignment:
Q  1 agaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgag 96  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| ||||    
T  9923771 agaagaaataaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgag 9923672  T
Q  97 aatattccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    |||||||||||||| |||        ||||||||||||||||||||||||||||    
T  9923671 aatattccagatcttgag-tttttttgccttatacgtaatagagcaatagaaaa 9923619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 1970149 - 1970010
Alignment:
Q  14 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatgtg----agaatattgatgaccctattgtgtgagaatattccagatc 109  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||     ||||||||| |||||||||||| |||||||||||||||||    
T  1970149 atgcagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgtccataagaatattggtgaccctattgtatgagaatattccagatc 1970050  T
Q  110 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    | |||        ||||||||||||||||||||||||||||    
T  1970049 ttgag-tttttttgccttatacgtaatagagcaatagaaaa 1970010  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 43768425 - 43768577
Alignment:
Q  1 agaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgag 96  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| ||||    
T  43768425 agaagaaataaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgag 43768524  T
Q  97 aatattccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    |||||||||||||| |||        ||||||||||||||||||||||||||||    
T  43768525 aatattccagatcttgag-tttttttgccttatacgtaatagagcaatagaaaa 43768577  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 50427812 - 50427962
Alignment:
Q  4 agaaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaat 99  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||    ||||||||||| |||||||||||  |||||||    
T  50427812 agaaaaaatgatgcaacaatagaaattcaactaccctttgggaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgcatgagaat 50427911  T
Q  100 attccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    ||||||||||| |||        ||||| ||||||||||||||||||||||    
T  50427912 attccagatcttgagttttttttgccttctacgtaatagagcaatagaaaa 50427962  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14742111 - 14742047
Alignment:
Q  1 agaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttca 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  14742111 agaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttca 14742047  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7054483 - 7054633
Alignment:
Q  1 agaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgag 96  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||  |||    ||| ||||||| |||| ||||||  ||||    
T  7054483 agaagaaaaaatgatgcagcaatagaaattcaactaccctttaagaatatgaacaagaatgt--atgtccatgaaaatattggtgactctattgcatgag 7054580  T
Q  97 aatattccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 150  Q
    |||||| ||||||| |||        ||||||||||||||| ||||||||||||    
T  7054581 aatatttcagatcttgag-ttcttttgccttatacgtaataaagcaatagaaaa 7054633  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 42345812 - 42345863
Alignment:
Q  17 cagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatgt 68  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  42345812 cagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgt 42345863  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 32904036 - 32903997
Alignment:
Q  149 aagttagatttgattctgatcatgatataaagataatgaa 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32904036 aagttagatctgattctgatcatgatataaagataatgaa 32903997  T

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