View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2839_low_21 (Length: 257)
Name: NF2839_low_21
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_21 |
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| [»] scaffold0770 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 50566159 - 50565925
Alignment:
| Q |
4 |
gatgcaccctctttaaatgttttattatgggtttattttgagttcaaccttttaaat-tattcttagcctttcaagttcacaccgactaataactgctgc |
102 |
Q |
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| T |
50566159 |
gatgcaccctctttaa-tgttttattgtgggtttattttgagttcaaccttttaaatgtattcttagcctttcaagttcacacaaactaatgactaccgc |
50566061 |
T |
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| Q |
103 |
ataaattgattataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaaga |
202 |
Q |
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| T |
50566060 |
ataaattgattataaatatgtcttatgaacaactctttagtacat--gagtatatgaaatttcaatttgagagggtatgtaagagtattgtagaagaaga |
50565963 |
T |
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| Q |
203 |
atttttagaaacttatgtgatcttattgtgtctttttt |
240 |
Q |
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| T |
50565962 |
attcttaaaaaattatgttatcttattgtgcctttttt |
50565925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 50513962 - 50513739
Alignment:
| Q |
4 |
gatgcaccctctttaaatgttttattatgggtttattttgagttcaaccttttaaatt-attcttagcctttcaagttcacaccgactaataactgctgc |
102 |
Q |
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| T |
50513962 |
gatgcaccctctttaa-tgttttattgtggatttattttgagttcaaccttttaaatttattcttagcctttcaagttcacacagactaa---------- |
50513874 |
T |
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| Q |
103 |
ataaattgattataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaaga |
202 |
Q |
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| T |
50513873 |
------------taaatatgtcttatgaacaactctttagtacatatgagtatatgaaatttcaatttgagagggtatgtaagagtattgttgaagaaga |
50513786 |
T |
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| Q |
203 |
atttttagaaacttatgtgatcttattgtgtcttttttcttcatctc |
249 |
Q |
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| T |
50513785 |
actcttaaaaacttatgtgatcttattgtgtcttttttcttcttctc |
50513739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 38924568 - 38924497
Alignment:
| Q |
178 |
tatgtaagagtattgtataagaagaatttttagaaacttatgtgatcttattgtgtcttttttcttcatctc |
249 |
Q |
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| T |
38924568 |
tatgtaagagtattgtataagaagaatttttaaaaacttatgtgatcttattgtgtcttttttcttcttctc |
38924497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 4518 - 4586
Alignment:
| Q |
128 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
200 |
Q |
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| T |
4518 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
4586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 102822 - 102890
Alignment:
| Q |
128 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
200 |
Q |
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| T |
102822 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
102890 |
T |
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