View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2839_low_6 (Length: 457)
Name: NF2839_low_6
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 47876052 - 47876472
Alignment:
| Q |
18 |
gtaacttgagaaaactagaaagtgaccgttcatatcgccatgcttaccgccaaaaggaagtggctaacagattgggggagatgttatacgagggattaat |
117 |
Q |
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| T |
47876052 |
gtaacttgagaaaactagaaagtgaccgttcatatcgctatgcttaccgccaaaaggaagtggctaacagattgggggagatgttatacgagggattaat |
47876151 |
T |
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| Q |
118 |
tacgcatagcactggttccttctcgagcccagttcttcttataaacaagaatgatggaacttagcttgaggattataggacactaaataaggcgatggtg |
217 |
Q |
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| T |
47876152 |
tacgcatagcactggtcccttctcgagcccagttattcttataaaaaagaatgatgg-----accttgaggattataggacactaaataaggcgatggtg |
47876246 |
T |
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| Q |
218 |
catatcctcttactatggttaaatgacttgctcaatgaactggatggtttcagtaaaaataaggatttggttctgaatagcttgggagattagctctgag |
317 |
Q |
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| T |
47876247 |
catatcctcttactatggttaaatgacttgctcaatgaactggatggtttcagtaaaaataaggatttggttctgaatagcttgggagattaactctgag |
47876346 |
T |
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| Q |
318 |
cattctgtacgatgataaaaatatacaaagggaatcc-tttgacaaaagggactaaactgtcctatatcaatctaattacatcatagactcgatt-aaag |
415 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |
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| T |
47876347 |
cattttgtacgatgataaaaatatacaaagggaatccttttgacacaagggactaaactgtcctatatcaatctaattacatcagagacttgattaaaag |
47876446 |
T |
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| Q |
416 |
tatatatctcattcagagttatatac |
441 |
Q |
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| T |
47876447 |
tgtatatctcattcagagttatatac |
47876472 |
T |
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