View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2839_low_7 (Length: 390)
Name: NF2839_low_7
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_7 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] scaffold0658 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 39576410 - 39576799
Alignment:
| Q |
1 |
ttatcatgagatgggacctttcaattatgttgctgctagtggtaaccagcttaatattataagtgcgatatttcgtctgtggatcaacgatcaaattatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39576410 |
ttatcatgagatgggacctttcaattatgttgctgctagtggtaaccagcttaatattatgagtgcgatatttcgtttgtggatcaacgatcaaattatc |
39576509 |
T |
|
| Q |
101 |
attcgagtagctctacgtccaataagaaatatgttgacaaacgagaaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgatg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39576510 |
attcgagtagctatacgtccaataagaaatatgttgacaaacgagaaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgagg |
39576609 |
T |
|
| Q |
201 |
gcattgcctcgggtgattttgaagtatggcttcacactaacagtcttttttcattttcaagtactccgacatagctagttttgtggtataatatatttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39576610 |
gcattgcctcgggtgattttgaagtatggcttcacactaacagtcttttttcatttccaagtactccgacatagctagttttgtggtataatatatttag |
39576709 |
T |
|
| Q |
301 |
cagtattatttatagttgtcttgtttgaaaaacaagtatttatgtttctattaaattatttaagtttcatggcaacttctcaattattat |
390 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39576710 |
cagtattatttatagctgtcttgtttgaaaaacaagtatttatgtttctattaaattatttaagtttcatggcaacttctcaagtattat |
39576799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 39572404 - 39572793
Alignment:
| Q |
1 |
ttatcatgagatgggacctttcaattatgttgctgctagtggtaaccagcttaatattataagtgcgatatttcgtctgtggatcaacgatcaaattatc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
39572404 |
ttatcatgagatgggaccttttgattatgttgctgcttgtggtaaccagcttgatattatgattgagatattttgtctatggatcaacgatcaaattatc |
39572503 |
T |
|
| Q |
101 |
attcgagtagctctacg------tccaataagaaatatgttgacaaacgagaaaaacatacattttagttacaatgtcaagaccaaacaattgacaaaga |
194 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||| ||||||| |
|
|
| T |
39572504 |
attcgagtagctctatgactacatccaatagtaaatatgttgacaaacaggaaaaacatacattttaattacaatatcaaaaccaaacaatttacaaaga |
39572603 |
T |
|
| Q |
195 |
ttgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtcttttttcattttcaagtactccgacatagcta-gttttgtggtataata |
293 |
Q |
| |
|
|||| | |||||||||| ||||||| |||||||||||| || ||||||||||||||| ||||||||| |||||||||| || |||||| || ||| |
|
|
| T |
39572604 |
ttgaggacattgcctcgagtgattt------atggcttcacacgaatagtcttttttcatttccaagtactctgacatagctaagtgttgtggaatgata |
39572697 |
T |
|
| Q |
294 |
tatttagcagtattatttatagttgtcttgtttgaaaaacaagtatttatgtttctattaaattatttaagtttcatggcaacttctcaattattat |
390 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||| |||||| |
|
|
| T |
39572698 |
tatttagtagtattatttatagttgtcttgtttgaaaaacaagtatttatgtttctatttaatta-ttaagtttcatggaaacttttcaagtattat |
39572793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 225549 - 225651
Alignment:
| Q |
144 |
agaaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacag |
243 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| | |||| ||||||||||||| |||| || ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
225549 |
agaaaaccatgcattttagttacaatgtcaagactagacaactgacaaagattgagggcactgttgtgggtgatattgaagtatggcttcacaccaacag |
225648 |
T |
|
| Q |
244 |
tct |
246 |
Q |
| |
|
||| |
|
|
| T |
225649 |
tct |
225651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 2326234 - 2326108
Alignment:
| Q |
146 |
aaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtc |
245 |
Q |
| |
|
|||||||| |||||| |||||||||| || |||| |||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2326234 |
aaaaacattcattttggttacaatgtgaataccaggcaattgacaaagattggagacattgatgtgggccattttgaagtatgtcttcacactaacagtt |
2326135 |
T |
|
| Q |
246 |
ttttttcattttcaagtactccgacat |
272 |
Q |
| |
|
| ||||||| || |||||||||||| |
|
|
| T |
2326134 |
taatttcattgccacgtactccgacat |
2326108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 9903113 - 9903244
Alignment:
| Q |
146 |
aaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtc |
245 |
Q |
| |
|
||||| || |||||| |||||||||| |||||||||||||||| ||||||||| | ||||| | ||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
9903113 |
aaaaagatgcatttttgttacaatgtgaagaccaaacaattgataaagattgaggacattgacgtgggagattttaaagtatggtttcacactaacagtc |
9903212 |
T |
|
| Q |
246 |
ttttttcattttcaagtactccgacatagcta |
277 |
Q |
| |
|
| ||||||| ||||||||||| |||||||| |
|
|
| T |
9903213 |
tagtttcattgtcaagtactccaccatagcta |
9903244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 314
Target Start/End: Original strand, 9842188 - 9842353
Alignment:
| Q |
150 |
acatacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtctttt |
249 |
Q |
| |
|
||||||||||| |||||||||| ||||||| ||||||||||||||||| | ||||| | || | ||||||||||| ||||||||||||||||| | |
|
|
| T |
9842188 |
acatacattttggttacaatgtgaagaccaggcaattgacaaagattgaggacattgacgttggcaactttgaagtatgtcttcacactaacagtctagt |
9842287 |
T |
|
| Q |
250 |
ttcattttcaagtactccgacatagct-agttttgtggtataatatatttagcagtattatttata |
314 |
Q |
| |
|
|||||| || ||||||| ||||||| |||||| || |||||||||| ||| |||||| |||||| |
|
|
| T |
9842288 |
ttcattgccaggtactcctgcatagctaagttttctgctataatatatgtagtagtattgtttata |
9842353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 277
Target Start/End: Original strand, 9847220 - 9847345
Alignment:
| Q |
152 |
atacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtctttttt |
251 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||||| |||||| | | ||| | ||| || |||||||||||||||||||||||| ||| ||| |
|
|
| T |
9847220 |
atacattttggttacaatgtgaagaccaggcaattgactaagattaaggacatcgatgagggaaatattgaagtatggcttcacactaacaatctagttt |
9847319 |
T |
|
| Q |
252 |
cattttcaagtactccgacatagcta |
277 |
Q |
| |
|
|||| ||||||||||| |||||||| |
|
|
| T |
9847320 |
cattgccaagtactccggcatagcta |
9847345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 277
Target Start/End: Original strand, 9860823 - 9860956
Alignment:
| Q |
144 |
agaaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacag |
243 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| || | ||||||||||| ||| || ||||||| |||||||||||| |||||| ||||| |||||| |
|
|
| T |
9860823 |
agaaaaacattcattttggttacaatgtcaaaactagacaattgacaatgatcgagggcattgatgtgggtgattttgaggtatggtctcacattaacag |
9860922 |
T |
|
| Q |
244 |
tcttttttcattttcaagtactccgacatagcta |
277 |
Q |
| |
|
| | ||||||| || ||||||| |||||||| |
|
|
| T |
9860923 |
tttagtttcattgccatgtactccagcatagcta |
9860956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 27361197 - 27361338
Alignment:
| Q |
156 |
attttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtcttttttcatt |
255 |
Q |
| |
|
||||| |||||||||||||||| | | || ||||||| |||||||||||||| |||| ||| ||| ||||||||||| || |||| ||| |||| || |
|
|
| T |
27361197 |
atttttgttacaatgtcaagactagagaactgacaaaaattgatggcattgcagtgggtaattatgatgtatggcttcataccaacactctagtttcgtt |
27361296 |
T |
|
| Q |
256 |
ttcaagtactccgacatagcta-gttttgtggtataatatat |
296 |
Q |
| |
|
||||| |||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
27361297 |
gccaagtgctccaacatagctaggttttctggtataaaatat |
27361338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 9842103 - 9842141
Alignment:
| Q |
71 |
tttcgtctgtggatcaacgatcaaattatcattcgagta |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
9842103 |
tttcgtttgtggatcaacgatcaaattatctttcgagta |
9842141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 278
Target Start/End: Complemental strand, 5054105 - 5053977
Alignment:
| Q |
150 |
acatacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtctttt |
249 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||| || |||||| || ||| ||||||| ||||||| |||| |||||| | | |
|
|
| T |
5054105 |
acatacattttggttacaatgtcaagaccaaacatttgacaaagatcgagggcattaccatgggcaattttgaggtatggcctcacgtcaacagtttagt |
5054006 |
T |
|
| Q |
250 |
ttcattttcaagtactccgacatagctag |
278 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
5054005 |
ttcatttccaagtactccgacatagctag |
5053977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 348
Target Start/End: Complemental strand, 46671951 - 46671765
Alignment:
| Q |
162 |
gttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtcttttttcattttcaag |
261 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| | ||||||| ||| ||||| | |||||||||||||||||||||| | || ||| |||| |
|
|
| T |
46671951 |
gttacaatgtcaagaccagacaactgacaatgattaagggcattgatgtgggcgattta-aggtatggcttcacactaacagtcgtgttacatggccaag |
46671853 |
T |
|
| Q |
262 |
tactccgacatagctagttttg-tggtataatatatttagcagtattatttatagttgtcttgtttgaaaaacaagtatttatgtttc |
348 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||| ||| ||| | ||||||||||| ||||||| |||||| |||| |||||||||||| |
|
|
| T |
46671852 |
tactccaacatagctaggtttcctggtataatttatgtagtattattatttatatttgtcttagttgaaacacaaatatttatgtttc |
46671765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5054239 - 5054124
Alignment:
| Q |
1 |
ttatcatgagatgggacctttcaattatgttgctgctagtggtaaccagcttaatattataagtgcgatatttcgtctgtggatcaacgatcaaattatc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||| | ||||| ||| | | || | |||||||| ||||||||||||||||||| ||| |
|
|
| T |
5054239 |
ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatactttgtatgtggtatttcgtttgtggatcaacgatcaaatcatc |
5054140 |
T |
|
| Q |
101 |
attcgagtagctctac |
116 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
5054139 |
tttaaagtatctctac |
5054124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 296
Target Start/End: Complemental strand, 2700 - 2559
Alignment:
| Q |
156 |
attttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtcttttttcatt |
255 |
Q |
| |
|
||||| |||||||||||||||| | | || ||||||| |||||||||||||| |||| ||| ||| ||||||||||| || |||| ||| |||| || |
|
|
| T |
2700 |
atttttgttacaatgtcaagactagagaactgacaaaaattgatggcattgcagtgggtaattatgatgtatggcttcataccaacactctagtttcgtt |
2601 |
T |
|
| Q |
256 |
ttcaagtactccgacatagcta-gttttgtggtataatatat |
296 |
Q |
| |
|
||||| |||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
2600 |
gccaagtgctccaacatagctaggttttctggtataaaatat |
2559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 894898 - 894955
Alignment:
| Q |
177 |
ccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttca |
234 |
Q |
| |
|
|||||||||||||||||||||| || |||| | ||||| |||||||||||||||||| |
|
|
| T |
894898 |
ccaaacaattgacaaagattgagggtattgatttgggtgcttttgaagtatggcttca |
894955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 7257005 - 7257105
Alignment:
| Q |
146 |
aaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgatggcattgcctcgggtgattttgaagtatggcttcacactaacagtc |
245 |
Q |
| |
|
||||||||| ||||| |||| ||||| ||||||| |||||||| |||||||| | ||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
7257005 |
aaaaacatatattttggttataatgtgaagaccaggcaattgactaagattgaggacattggaatgggcaattttgaagtatggtctcacactaacagtc |
7257104 |
T |
|
| Q |
246 |
t |
246 |
Q |
| |
|
| |
|
|
| T |
7257105 |
t |
7257105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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