View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2839_low_9 (Length: 376)
Name: NF2839_low_9
Description: NF2839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2839_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 45243102 - 45242752
Alignment:
| Q |
7 |
tattattattgaccttggttttcttgcaaaactccaaatcactccagcaagactcatcaacctctacatcaacactcctattggggtccatatagactgc |
106 |
Q |
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| T |
45243102 |
tattattattgaccttggttttcttgcaaaactccaaatcactccagcaagactcatcaacctctacatcaacactcctattggggtccatatagactgc |
45243003 |
T |
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| Q |
107 |
accaattgatgatgtgaaaaccacgcgcctcacttttgcttctgcaccagctatgatcacattctttgctccattcactgctggctccaccatttcctcc |
206 |
Q |
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| T |
45243002 |
accaattgatgatgtgaaaaccacgcgcctcacttttgcttctgcaccagctatgatcacattctttgctccattcactgctggctccaccatttcctcc |
45242903 |
T |
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| Q |
207 |
tgtgtgtaataactttcttcgtataaaatcaaattcgtattttgcaatttaaaattttaaaataatagaataatagtccc----------------atta |
290 |
Q |
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| T |
45242902 |
tgtgtgtaataactttcttcgtataaaatcaaattggtattttgcaattgaaaattttaaaataatagaataatagtcccatgagcatattatattatta |
45242803 |
T |
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| Q |
291 |
ttaagaacagctatgttatttcaacaattatttttgagacaagttataaata |
342 |
Q |
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| T |
45242802 |
ttaagaagagctatgtta-ttcaacaattatttttgagacaagttataaata |
45242752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 863902 - 863727
Alignment:
| Q |
18 |
accttggttttcttgcaaaactccaaatcactccagcaagactcatcaacctctacatcaacactcctattggggtccatatagactgcaccaattgatg |
117 |
Q |
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| T |
863902 |
accttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgggtccatatagaccgttccaatcgatg |
863803 |
T |
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| Q |
118 |
atgtgaaaaccacgcgcctcacttttgcttctgcaccagctatgatcacattctttgctccattcactgctggctc |
193 |
Q |
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| T |
863802 |
aagtgaaaacaacacgtcgcactttagcttccgcggacgctataatcacattcttagttccattcactgctggctc |
863727 |
T |
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