View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_11 (Length: 351)
Name: NF2840_high_11
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 17136764 - 17136444
Alignment:
| Q |
18 |
tgttgagatactgttgcgagataaaataaatctattagaatgagggcggaagagacacatgtacataaaatatagtgcttgattgtttgcagggaagact |
117 |
Q |
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| T |
17136764 |
tgttgagatactgttgcgagataaaataaatctattagaatgagggcggaagagacacatgtacgtaaaatatagtgcttgattgtttgcagggaagact |
17136665 |
T |
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| Q |
118 |
taccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactg |
217 |
Q |
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| T |
17136664 |
taccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactg |
17136565 |
T |
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| Q |
218 |
tgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacgtgactactacattgttgtcac |
317 |
Q |
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| T |
17136564 |
tgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacatgactactacattgttgtcac |
17136465 |
T |
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| Q |
318 |
aacaaggttcacgtcacaggt |
338 |
Q |
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| T |
17136464 |
aacaaggttcacgtcacaggt |
17136444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 101 - 338
Target Start/End: Original strand, 17347135 - 17347372
Alignment:
| Q |
101 |
tgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggt |
200 |
Q |
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| T |
17347135 |
tgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggt |
17347234 |
T |
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| Q |
201 |
ggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacgtgac |
300 |
Q |
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| T |
17347235 |
ggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacatgac |
17347334 |
T |
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| Q |
301 |
tactacattgttgtcacaacaaggttcacgtcacaggt |
338 |
Q |
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| T |
17347335 |
tactacattgttgtcacaacaaggttcacgtcacaggt |
17347372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 37091287 - 37091114
Alignment:
| Q |
122 |
gattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactgtgca |
221 |
Q |
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||||||||||||||||||| || | || || ||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||| ||||| | || |
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| T |
37091287 |
gattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactaca |
37091188 |
T |
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| Q |
222 |
aaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccac |
295 |
Q |
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| T |
37091187 |
aaacacttatgattcccttgatattcatttggggcagagttactctgtattggttactgctgatcaaccaccac |
37091114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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