View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_13 (Length: 346)
Name: NF2840_high_13
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 35967514 - 35967834
Alignment:
| Q |
12 |
agagagacacaacataaatgtcaagagattcctaaccattgcaaaacaagagaccaaaatcttatcagacggcgatcacctccaacaacaatgtcatgat |
111 |
Q |
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| T |
35967514 |
agagagacacaacataaatgtcaagagattcctaaccattgcaaaacaagagaccaaaatcttatcggacggcaatcacctccaacaacaatgtcatgat |
35967613 |
T |
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| Q |
112 |
ataagaaaacaacgtgaccaaatttacaattaagaaccacagagacctctaccaatcaagaaccagccacattcacacccatcaataaacgcttatgaaa |
211 |
Q |
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| T |
35967614 |
ataagaaaacaatgtgaccaaatttacaattaagaaccacagagacctctaccaaccaagaaccagccacattcacacccatcaataaacgcttatgaaa |
35967713 |
T |
|
| Q |
212 |
gttcaccttcaaactcaaaattatctcaaagagaataaaattaacttttatagctctaatattcacctaactttta----taacaatcagagtatcatca |
307 |
Q |
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| T |
35967714 |
gttcaccttcaaactcaaaattatctcaaagagaataagattaacttttatagctctaatattcacccaacttttacgtccaacaatcagagtatcatca |
35967813 |
T |
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| Q |
308 |
acaaattgtaaatgagaaata |
328 |
Q |
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| T |
35967814 |
acaaattgtaaatgagaaata |
35967834 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 20796851 - 20796885
Alignment:
| Q |
295 |
cagagtatcatcaacaaattgtaaatgagaaatat |
329 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
20796851 |
cagagtatcatcaacaaattataaatgagaaatat |
20796885 |
T |
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