View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2840_high_15 (Length: 332)
Name: NF2840_high_15
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 22041377 - 22041091
Alignment:
| Q |
1 |
caaggaagatggaaaccaaagtaacatgataat-ataaaactctatgcttataatttatgtctaaatcaagcatgctcctgttaaatgagcatataatta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041377 |
caaggaagatggaaaccaaagtaacatgataattataaaactctatgcttataatttatgtctaaatcaagcatgctcctgttaaatgagcatataatta |
22041278 |
T |
|
| Q |
100 |
caaagccatcctataaacaatgcaaaaactttcagattcttttgcaatgaaaaccatgctcaatacttcttacaatacagtattaaatgcatgtgaaaag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22041277 |
caaagccatcctataaacaatgcaaaaactttcagattcttttgcaacgaaaaccatgctcaatacttcttacaacacagtattaaatgcatgtgaaaag |
22041178 |
T |
|
| Q |
200 |
gatttcaaactatgatataagtgtatagtacatgaaataaaagattttgaaatagattaataaatataactatgagataagtgtata |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041177 |
gatttcaaactatgatataagtgtatagtacatgaaataaaagattttaaaatagattaataaatataactatgagataagtgtata |
22041091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 22038323 - 22038233
Alignment:
| Q |
77 |
cctgttaaatgagcatataattacaaagccatcctataaacaatgcaaaaactttcagattcttttgcaatgaaaaccatgctcaatactt |
167 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
22038323 |
cctgttaaaagagcatataataacaaagccatcctataaactatgccaaaactttcggattcttctgcaatgaaaaccatgctcaatactt |
22038233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 22041055 - 22041017
Alignment:
| Q |
284 |
ataaggtttggaaaaatacaatttatctgacatttataa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041055 |
ataaggtttggaaaaatacaatttatctgacatttataa |
22041017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 22038206 - 22038157
Alignment:
| Q |
159 |
tcaatacttcttacaatacagtattaaatgcatgtgaaaaggatttcaaa |
208 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||||||| |
|
|
| T |
22038206 |
tcaatacttcttaaaacacagtattaaatacatgtgaaaaggatttcaaa |
22038157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 22015799 - 22015743
Alignment:
| Q |
142 |
tgcaatgaaaaccatgctcaatacttcttacaatacagtattaaatgcatgtgaaaa |
198 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||| |||||||| |||| ||||| |
|
|
| T |
22015799 |
tgcaaggaaaaccatgctcaatacatcttacagcacaatattaaatacatgagaaaa |
22015743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University