View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_16 (Length: 327)
Name: NF2840_high_16
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 8309383 - 8309075
Alignment:
| Q |
19 |
gtatagatattacttgaatggtttttatgtagctatctaggaccaggattgattgtagtatataatatgaaaaaggtaactttgttattaatattcatat |
118 |
Q |
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| T |
8309383 |
gtatagatattacttgaatggtttttatgtagctatctaggaccaggattgattgtactatataatatgaaaaaggtaactttgttattaatattcatat |
8309284 |
T |
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| Q |
119 |
tgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattgagtctggtggtgaaagaactcacggaagtgtg |
218 |
Q |
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| T |
8309283 |
tgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattgagtctggtggtgaaagaactcacggaagtgtg |
8309184 |
T |
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| Q |
219 |
ttttcttcaatggttgaacgactgaatgctgaaattcaaactcttttggggcatttaaagtatcttgtttttaataaattacgctggtttttatcttgtt |
318 |
Q |
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| T |
8309183 |
ttttcttcaatggttgaacgactgaatgctgaaattcaaactcttttggggcatttaaagtatcttgtttttaataaattacgctggtttttatcttgtt |
8309084 |
T |
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| Q |
319 |
tttattttt |
327 |
Q |
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||||||||| |
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| T |
8309083 |
tttattttt |
8309075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 8299906 - 8299744
Alignment:
| Q |
19 |
gtatagatattacttgaatggtttttatgtagctatctaggaccaggattgattgtagtatataatatgaaaaaggtaactttgttattaatattcatat |
118 |
Q |
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| T |
8299906 |
gtatagatattatttgaatggtttttaggtagttatctaggattagaattgaatgtactatataatatgaaaatggtaact------ttaatattgatac |
8299813 |
T |
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| Q |
119 |
tgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattga |
187 |
Q |
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| T |
8299812 |
tgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattga |
8299744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 27662813 - 27662695
Alignment:
| Q |
162 |
agatagatataaattagcatcattgagtctggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactc |
261 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||| || | ||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
27662813 |
agataggtatagattagcatcattgagtctggtggagaaagaacacaagcaagtgtggtttcttcaatggtcgaacgagtgaatgctgaaattcaaactc |
27662714 |
T |
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| Q |
262 |
ttttggggcatttaaagta |
280 |
Q |
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| T |
27662713 |
ttttggggcatttaaagta |
27662695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 21120778 - 21120857
Alignment:
| Q |
32 |
ttgaatggtttttatgtagctatctaggaccaggattgattgtagtatataatatgaaaaaggtaactttgttattaatatt |
113 |
Q |
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||||| |||||||||| |||||||||| | |||||||||| || |||| ||||||||| ||||||||||||||||||||| |
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| T |
21120778 |
ttgaagggtttttatgcagctatctagaattaggattgattctactata--atatgaaaatggtaactttgttattaatatt |
21120857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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