View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_18 (Length: 312)
Name: NF2840_high_18
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 49672389 - 49672137
Alignment:
| Q |
13 |
aatatcaaatgagaagtcctaacattacaagagacgaagnnnnnnntttggtgttaaccttccggtttcaaggaaaaaggtctttataatcatttgagct |
112 |
Q |
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| T |
49672389 |
aatatcaaatgagaagtcctaacattacaagagacgaagaaaaaaatttggtgttaaccttccggtttcaaggaaaaaggtctttataatcatttgagct |
49672290 |
T |
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| Q |
113 |
caattgcttggttcgaaggaagcaaataaaatctcatataaaagaaaagagaatcaaatcattatatacacactactgtctaaaaggacaaaaactgccc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672289 |
caattgcttggttcgaaggaagcaaataaaatctcatataaaagaagagagaatcaaatcattatatacacactactgtctaaaaggacaaaaactgccc |
49672190 |
T |
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| Q |
213 |
ttaatatagttgtaacaaaaccctttttgtataacatattatctaagattatt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672189 |
ttaatatagttgtaacaaaaccctttttgtataacatattatctaagattatt |
49672137 |
T |
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