View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_2 (Length: 515)
Name: NF2840_high_2
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 114 - 389
Target Start/End: Complemental strand, 27418727 - 27418452
Alignment:
| Q |
114 |
tttgatacagaagctgctcaaaagcttatcaaaattttaaactttactacttcagatcctacttgttccaattagagaactcttaaaaataatcatgttt |
213 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27418727 |
tttgatacagaagct---caaaagcttatcaaaaatttaaactttactacttcagatcctactagttccaattagagaactcttaaaaataatcatgttt |
27418631 |
T |
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| Q |
214 |
ttt---ccttttgagagcaatttggtagcatgaaattgaagtccaaatctgcctaaaaaatattaatggaaatatcagtatatacgatgggtcttgttta |
310 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27418630 |
ttttttccttttgagagcaatttggtagcatggaattgaagtccaaattttcctaataaatattaatggaaatatcagtatatacgatgggtcttgttt- |
27418532 |
T |
|
| Q |
311 |
cagctgcacaataacaaataattatggcaattaatgggtccagaagactagaaagacatgaatcac---ctaaaaatctcaa |
389 |
Q |
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|||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
27418531 |
--gctgcataataacaagtaattagggcaattaatgggtctagaagactagaaagacatgaatcacgaactaaaaatctcaa |
27418452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 121 - 352
Target Start/End: Original strand, 15983079 - 15983300
Alignment:
| Q |
121 |
cagaagctgctcaaaagcttatcaaaattttaaactttactacttcagatcctacttgttccaattagagaactcttaaaaataatcatgttttttcctt |
220 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| || ||||| | ||||| ||||||| || |||| ||| | |
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| T |
15983079 |
cagaagctactctaaagcttatcaaaattttaaactttac--------atcctacttgttctaactagaggattcttataaataatgatattttatccat |
15983170 |
T |
|
| Q |
221 |
ttgagagcaatttggtagcatgaaattgaagtccaaatctgcctaaaaaatattaatggaaatatcagtatatacgatgggtc-ttgtttacagctgcac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||| ||||| |||| ||||||||||||||||| |||||||| ||||||| | ||| |
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| T |
15983171 |
ttgagagcaatttggtagcatgaaattgaagtccaaatttatctacaaaatgttaaaggaaatatcagtatatatgatgggtctttgttta---cggcat |
15983267 |
T |
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| Q |
320 |
aataacaaataattatggcaattaatgggtcca |
352 |
Q |
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|| ||| | |||||||| ||||||||||||||| |
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| T |
15983268 |
aacaacgagtaattatgacaattaatgggtcca |
15983300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27420151 - 27420086
Alignment:
| Q |
1 |
gctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaatta |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27420151 |
gctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaatta |
27420086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 27418428 - 27418353
Alignment:
| Q |
417 |
tgggtgaattttataatgtaactgtgttcgaaaccagtattgaggtggaagatagtaaggttgaagacaatgtatt |
492 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
27418428 |
tgggtgaattttgtaatgtaactgtgttcgaaaccaatattgaggtggaagatagtaaggttgaagacaatatatt |
27418353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40450833 - 40450766
Alignment:
| Q |
1 |
gctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa |
68 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||| |
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| T |
40450833 |
gctctcatcaacactcttcaattcttcttgaattgcaaaagatgattaaatcacaaacaataattaaa |
40450766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 35758606 - 35758646
Alignment:
| Q |
13 |
actcttcaattcttcttgaattgcaaaagagggctaaatca |
53 |
Q |
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| T |
35758606 |
actcttcaattctccttgaattgcaaaagagggctaaatca |
35758646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 41348777 - 41348722
Alignment:
| Q |
13 |
actcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa |
68 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||||| |||| |||||||| |
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| T |
41348777 |
actcttcaattatccttgaattgcaaaagagggttaaatcacaaacaataattaaa |
41348722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 36391152 - 36391192
Alignment:
| Q |
2 |
ctctcatcaacactcttcaattcttcttgaattgcaaaaga |
42 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
36391152 |
ctctcatcaacactcttcaattcttcttgaattgcaaaaga |
36391192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 29920928 - 29920983
Alignment:
| Q |
13 |
actcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa |
68 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
29920928 |
actcttcaattatccttgaattgcaaaagagggctaaatcacaaacaataattaaa |
29920983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 21982712 - 21982776
Alignment:
| Q |
2 |
ctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa |
68 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||| ||||||| || |||||||||| |
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| T |
21982712 |
ctctcatcaacaatcttcaattcttcttgaattgc--aagagggttaaatcataaatagtaattaaa |
21982776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8653007 - 8653045
Alignment:
| Q |
1 |
gctctcatcaacactcttcaattcttcttgaattgcaaa |
39 |
Q |
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||||||||||||| | ||||||||||||||||||||||| |
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| T |
8653007 |
gctctcatcaacattgttcaattcttcttgaattgcaaa |
8653045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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