View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2840_high_27 (Length: 250)

Name: NF2840_high_27
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2840_high_27
NF2840_high_27
[»] chr8 (6 HSPs)
chr8 (63-132)||(18935061-18935130)
chr8 (78-132)||(7535308-7535362)
chr8 (62-120)||(18548558-18548616)
chr8 (63-132)||(4623077-4623146)
chr8 (76-132)||(4623449-4623505)
chr8 (52-132)||(18429450-18429530)
[»] chr7 (7 HSPs)
chr7 (76-131)||(43511199-43511254)
chr7 (76-131)||(10017942-10017997)
chr7 (95-134)||(43510886-43510925)
chr7 (63-131)||(6376375-6376443)
chr7 (76-132)||(17813984-17814040)
chr7 (63-123)||(48461809-48461869)
chr7 (63-119)||(6376695-6376751)
[»] chr4 (8 HSPs)
chr4 (63-132)||(4592691-4592760)
chr4 (63-132)||(5688729-5688798)
chr4 (63-132)||(4416813-4416882)
chr4 (76-132)||(20269213-20269269)
chr4 (57-132)||(37724725-37724800)
chr4 (61-132)||(52485350-52485421)
chr4 (63-128)||(24671964-24672029)
chr4 (63-123)||(16399251-16399311)
[»] chr2 (9 HSPs)
chr2 (57-131)||(1353132-1353206)
chr2 (63-120)||(13140310-13140367)
chr2 (59-132)||(13140594-13140667)
chr2 (63-132)||(26845517-26845586)
chr2 (63-123)||(13490191-13490251)
chr2 (24-132)||(14473514-14473622)
chr2 (63-132)||(27957056-27957125)
chr2 (63-120)||(29526929-29526986)
chr2 (63-120)||(36006244-36006301)
[»] scaffold0400 (2 HSPs)
scaffold0400 (76-132)||(9921-9977)
scaffold0400 (76-132)||(9587-9643)
[»] scaffold0365 (2 HSPs)
scaffold0365 (76-132)||(10564-10620)
scaffold0365 (76-132)||(10230-10286)
[»] chr6 (4 HSPs)
chr6 (76-132)||(34829904-34829960)
chr6 (63-134)||(32629069-32629140)
chr6 (94-124)||(28705876-28705906)
chr6 (60-119)||(29675173-29675233)
[»] chr1 (9 HSPs)
chr1 (76-131)||(36783426-36783481)
chr1 (76-132)||(48171785-48171841)
chr1 (94-132)||(8718415-8718453)
chr1 (63-132)||(19987342-19987411)
chr1 (63-128)||(22792302-22792367)
chr1 (63-131)||(143149-143217)
chr1 (63-131)||(22792613-22792681)
chr1 (24-132)||(31872716-31872824)
chr1 (63-131)||(34518290-34518358)
[»] scaffold0015 (1 HSPs)
scaffold0015 (76-132)||(47424-47480)
[»] scaffold0045 (1 HSPs)
scaffold0045 (76-134)||(29616-29674)


Alignment Details
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 18935130 - 18935061
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    ||||||||||| ||||||||| | ||  || |||||||||||||||||||||||||||||||||||||||    
T  18935130 accaacttaaaagttttaaaacaaaagggaccaacttaaaacttaaaataaacataagagaccaaacatg 18935061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 7535362 - 7535308
Alignment:
Q  78 ttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  7535362 ttaaaacataaaagaccaacttaaaacgtaaaataaacataagagaccaaacatg 7535308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 18548616 - 18548558
Alignment:
Q  62 aaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataag 120  Q
    ||||||||||||  |||||||| |||||  | ||||||||||| |||||||||||||||    
T  18548616 aaccaacttaaaacttttaaaacataaagtaccaacttaaaacctaaaataaacataag 18548558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 4623146 - 4623077
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||||||  |||||||| ||||  |||||| ||||||  ||||||||||||||| || ||||||||    
T  4623146 accaacttaaaacttttaaaacataagggatcaatttaaaaactaaaataaacataagggatcaaacatg 4623077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 4623449 - 4623505
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| ||||| ||||||||| |||  ||||||||||||||| || ||||||||    
T  4623449 ttttaaaacataaaggatcaacttgaaaactaaaataaacataagggatcaaacatg 4623505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 18429530 - 18429450
Alignment:
Q  52 taatcttttgaaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||| ||||| |||||||| ||  |||||||| ||||  || |||||| |||  |||||||||||||||||| ||||||||    
T  18429530 taatattttggaccaacttgaaacttttaaaatataagggaccaacttgaaaactaaaataaacataagagatcaaacatg 18429450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 43511199 - 43511254
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  43511199 ttttaaaacataaaagatcatcttaaaacttaaaataaacataagagatcaaacat 43511254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 10017942 - 10017997
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  10017942 ttttaaaacataagagaccaacttaaaacctaaaataaacataagagaccaaacat 10017997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 43510925 - 43510886
Alignment:
Q  95 aacttaaaacttaaaataaacataagagaccaaacatgta 134  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43510925 aacttaaaacttgaaataaacataagagaccaaacatgta 43510886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 6376443 - 6376375
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    |||||||||||  |||||||| |||||  | ||||||||||| ||||||||||||||  ||||||||||    
T  6376443 accaacttaaaacttttaaaacataaagaaccaacttaaaacctaaaataaacataaaggaccaaacat 6376375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 17814040 - 17813984
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| |||| ||| |||||| |||| |||||||||||||||||| ||||||||    
T  17814040 ttttaaaacataagagaccaacttgaaacctaaaataaacataagagatcaaacatg 17813984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 48461869 - 48461809
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagaga 123  Q
    |||||||||||  |||||||| ||||| |||||||||||||  ||||| ||||||||||||    
T  48461869 accaacttaaaacttttaaaacataaaggatcaacttaaaaactaaaacaaacataagaga 48461809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 6376695 - 6376751
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataa 119  Q
    |||||| ||||  |||||||| ||||| || ||||||||||| ||||||||||||||    
T  6376695 accaacctaaagcttttaaaacataaatgaccaacttaaaacctaaaataaacataa 6376751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 4592691 - 4592760
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||||||  |||||||| |||| ||| ||||||||||| ||||||||||||||| |||||||||||    
T  4592691 accaacttaaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagggaccaaacatg 4592760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 5688729 - 5688798
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||||||  |||||||| |||| ||| |||||||||||||||| ||||||| || |||||||||||    
T  5688729 accaacttaaaatttttaaaacataagagagcaacttaaaacttaaagtaaacattagggaccaaacatg 5688798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 4416813 - 4416882
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||||||  |||||||| ||||  || ||||||||||  |||||||||||||||||| ||||||||    
T  4416813 accaacttaaaatttttaaaacataagggaccaacttaaaaactaaaataaacataagagatcaaacatg 4416882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 20269213 - 20269269
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| |||| ||| ||||||||||| ||||||||||||| |||| ||||||||    
T  20269213 ttttaaaacataagagaccaacttaaaacgtaaaataaacatacgagatcaaacatg 20269269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 37724725 - 37724800
Alignment:
Q  57 ttttgaaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    ||||| |||||||| ||  ||||||||  |||  |||||||||||||  |||||||||||||||||| ||||||||    
T  37724725 ttttggaccaacttgaaacttttaaaacctaagggatcaacttaaaaactaaaataaacataagagatcaaacatg 37724800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 52485421 - 52485350
Alignment:
Q  61 gaaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||||||||  |||||||| ||||  |||||||||||||  ||||||||||||||  || ||||||||    
T  52485421 gaaccaacttaaaacttttaaaacataagggatcaacttaaaaactaaaataaacataatggatcaaacatg 52485350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 24672029 - 24671964
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaa 128  Q
    |||||||| ||  |||||||| ||||| |||||||||||||  |||||||||| |||| |||||||    
T  24672029 accaacttgaaacttttaaaacataaatgatcaacttaaaatctaaaataaacttaagggaccaaa 24671964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 16399251 - 16399311
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagaga 123  Q
    |||||||||||  |||||||| ||||| || ||| ||||||  ||||||||||||||||||    
T  16399251 accaacttaaaaattttaaaacataaaggaccaatttaaaatctaaaataaacataagaga 16399311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 1353132 - 1353206
Alignment:
Q  57 ttttgaaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    ||||| |||||||| ||  |||||||| |||| ||| ||||||||||| |||||||||||| |||||||||||||    
T  1353132 ttttggaccaacttgaaacttttaaaacataagagaccaacttaaaacctaaaataaacatgagagaccaaacat 1353206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 13140367 - 13140310
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataag 120  Q
    |||||||||||  |||||||| |||||||| ||||||||||| |||||||||||||||    
T  13140367 accaacttaaaacttttaaaacataaaagaccaacttaaaacctaaaataaacataag 13140310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 13140594 - 13140667
Alignment:
Q  59 ttgaaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||||||| ||  |||||||| ||||| || ||||||||||  ||||||||||| ||| |||||||||||    
T  13140594 ttgaaccaacttgaaacttttaaaatataaatgaccaacttaaaatctaaaataaacacaagggaccaaacatg 13140667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 26845517 - 26845586
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| ||  |||||||| ||||  || ||||||||||| ||||||||||||||| |||||||||||    
T  26845517 accaacttgaaacttttaaaacataagggaccaacttaaaacctaaaataaacataagggaccaaacatg 26845586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 13490251 - 13490191
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagaga 123  Q
    |||||||||||  |||||||| ||||| |||||||||||||  |||| |||||||||||||    
T  13490251 accaacttaaaacttttaaaacataaaggatcaacttaaaaactaaagtaaacataagaga 13490191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 14473622 - 14473514
Alignment:
Q  24 ggaatggactgacttatgtcaatgtcattaatcttttgaaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagaga 123  Q
    |||| ||||| ||||||  |||| | |||||  ||||| || ||||||||  |||||||| ||||  || ||||| ||||||||||||||||| ||| ||    
T  14473622 ggaagggactaacttattccaatatgattaacattttggacaaacttaaaacttttaaaacataagggaccaactcaaaacttaaaataaacaaaagcga 14473523  T
Q  124 ccaaacatg 132  Q
    |||||||||    
T  14473522 ccaaacatg 14473514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 27957056 - 27957125
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    ||||| |||||  |||||||| |||| ||| | |||| |||| |||||||||||||||||| ||||||||    
T  27957056 accaagttaaaacttttaaaatataagagacctacttgaaacctaaaataaacataagagatcaaacatg 27957125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 29526929 - 29526986
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataag 120  Q
    |||||||||||  |||||||| ||||  || |||||||||| ||||||||||||||||    
T  29526929 accaacttaaaacttttaaaacataatggaccaacttaaaaattaaaataaacataag 29526986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 36006244 - 36006301
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataag 120  Q
    |||||||||||   ||||||| ||||| || ||||||||||||||||||||| |||||    
T  36006244 accaacttaaaacatttaaaacataaatgaccaacttaaaacttaaaataaaaataag 36006301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 9921 - 9977
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||||||    
T  9921 ttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatg 9977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 9643 - 9587
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| ||||  || || ||||||| ||||||||||||||||||| ||||||||    
T  9643 ttttaaaacataagggaccatcttaaaaattaaaataaacataagagatcaaacatg 9587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 10564 - 10620
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||||||    
T  10564 ttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatg 10620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 10286 - 10230
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| ||||  || || ||||||| ||||||||||||||||||| ||||||||    
T  10286 ttttaaaacataagggaccatcttaaaaattaaaataaacataagagatcaaacatg 10230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 34829904 - 34829960
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||||||    
T  34829904 ttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatg 34829960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 32629140 - 32629069
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatgta 134  Q
    |||||||||||  |||||||| ||||| |   |||||||||| ||||||||||||||| || ||||||||||    
T  32629140 accaacttaaaatttttaaaacataaaggtctaacttaaaacctaaaataaacataagggatcaaacatgta 32629069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 28705876 - 28705906
Alignment:
Q  94 caacttaaaacttaaaataaacataagagac 124  Q
    |||||||||||||||||||||||||||||||    
T  28705876 caacttaaaacttaaaataaacataagagac 28705906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 29675173 - 29675233
Alignment:
Q  60 tgaaccaacttaaa-tgttttaaaagataaaagatcaacttaaaacttaaaataaacataa 119  Q
    |||||||||||||| | |||||||| || | ||| ||||||||||| ||||||||||||||    
T  29675173 tgaaccaacttaaaatcttttaaaacatgagagaccaacttaaaacctaaaataaacataa 29675233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 36783426 - 36783481
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    |||||||| |||||||| ||||||||||  |||||| |||||||||||||||||||    
T  36783426 ttttaaaacataaaagaccaacttaaaatctaaaatgaacataagagaccaaacat 36783481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 48171785 - 48171841
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| ||||| || |||||| |||| ||||||||||||||| |||||||||||    
T  48171785 ttttaaaacataaaggaccaacttgaaacctaaaataaacataagggaccaaacatg 48171841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 8718453 - 8718415
Alignment:
Q  94 caacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  8718453 caacttaaaacctaaaataaacacaagagaccaaacatg 8718415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 19987411 - 19987342
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||||||  |||||||| ||||| || ||||||||||  ||||||||||||| | || ||||||||    
T  19987411 accaacttaaaacttttaaaacataaaggaacaacttaaaaactaaaataaacatatgggatcaaacatg 19987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 22792367 - 22792302
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaa 128  Q
    |||||||||||  |||||||| | ||  || ||||||||||||||||||||||||| | |||||||    
T  22792367 accaacttaaaacttttaaaacaaaagggaccaacttaaaacttaaaataaacatatgggaccaaa 22792302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 143149 - 143217
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    |||||||||||  |||||||  ||| | || ||||||||||| ||||||||||||||| || |||||||    
T  143149 accaacttaaaacttttaaagcatataggaccaacttaaaacctaaaataaacataagggatcaaacat 143217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 22792613 - 22792681
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    |||||||||||  ||||||||  |||  || ||||||||||| ||||||||||||| | ||||||||||    
T  22792613 accaacttaaaacttttaaaacttaagggaccaacttaaaacctaaaataaacatatgggaccaaacat 22792681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 31872824 - 31872716
Alignment:
Q  24 ggaatggactgacttatgtcaatgtcattaatcttttgaaccaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagaga 123  Q
    |||||||||| |||||| ||||||| | |||  ||||| |||||||| ||  ||||||||  |||  || |||||| |||  ||||||||||||||| ||    
T  31872824 ggaatggactaacttatttcaatgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaactttaaaactaaaataaacataaggga 31872725  T
Q  124 ccaaacatg 132  Q
     ||||||||    
T  31872724 tcaaacatg 31872716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 34518290 - 34518358
Alignment:
Q  63 accaacttaaatgttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacat 131  Q
    ||||| |||||  |||||||| ||||| || ||||||||||  ||||||||||||||| || |||||||    
T  34518290 accaatttaaaacttttaaaatataaaggaccaacttaaaaactaaaataaacataagggatcaaacat 34518358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 47424 - 47480
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatg 132  Q
    |||||||| ||||  || ||||||||||| ||||||||||||||| |||||||||||    
T  47424 ttttaaaacataagcgaccaacttaaaacctaaaataaacataagggaccaaacatg 47480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 29674 - 29616
Alignment:
Q  76 ttttaaaagataaaagatcaacttaaaacttaaaataaacataagagaccaaacatgta 134  Q
    ||||||||  ||| |||||||||| |||  |||||||||||||||||| ||||||||||    
T  29674 ttttaaaacgtaagagatcaacttgaaaactaaaataaacataagagatcaaacatgta 29616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University