View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_28 (Length: 248)
Name: NF2840_high_28
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_28 |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: scaffold0074 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 31 - 234
Target Start/End: Original strand, 18725 - 18928
Alignment:
| Q |
31 |
ttgtatcctcatcggttggtgttgtatttgtgtcaacacgatcatgtgtcatacattgggcatcccttcaatcctatggcttgatgtctacatagtttga |
130 |
Q |
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| T |
18725 |
ttgtatcctcatctgttggtgatgtatttgtgtcaacacaatcatgtgtcctacattgggcatcccttcaatcctatggcttgatgtctacatagtttga |
18824 |
T |
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| Q |
131 |
aatttgattaatgagccaatttgttcattttttcagtttaatgaagggcctcaatttctatttgtgaagaagtacaatacatacatcctggtgacgtata |
230 |
Q |
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| T |
18825 |
aatttgattaatgagccaatttgttcattttttcagtttaatgaagggactcaatttctatttgtgaagaagtgcaatacatacatcctggtgaggtata |
18924 |
T |
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| Q |
231 |
aatt |
234 |
Q |
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|||| |
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| T |
18925 |
aatt |
18928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 47 - 234
Target Start/End: Original strand, 4060076 - 4060264
Alignment:
| Q |
47 |
tggtgttgtatttgtgtcaacacgatcatgtgtcatacattgggcatcccttcaatcctatggcttgatgtctacatagtttgaaatttgattaatgagc |
146 |
Q |
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| T |
4060076 |
tggtgttttatttgtgtcaacactatcatgtgtcatacattgggcatcccttcaatcctatggcttgatgtttacatagtttgaaatttgattaatgagc |
4060175 |
T |
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| Q |
147 |
caatttgttca-ttttttcagtttaatgaagggcctcaatttctatttgtgaagaagtacaatacatacatcctggtgacgtataaatt |
234 |
Q |
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| T |
4060176 |
caatttgttcatttttttcagtttaatgaagggcctcaatttctatttgtgaagaagtgcaatacatacatcctggtgaggtataaatt |
4060264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 47 - 234
Target Start/End: Original strand, 11363121 - 11363313
Alignment:
| Q |
47 |
tggtgttgtatttgtgtcaacacgatcatgtgtcatacattgggcatcccttcaatcctatggcttgatgtctacatagtttgaaatttgattaatgagc |
146 |
Q |
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| T |
11363121 |
tggtgttttatttgtgtcaacactatcatgtatcatacattgggcatcccttcaatcttatggcttgatgtctacatagtttgaaatttgattaatgagc |
11363220 |
T |
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| Q |
147 |
caatttgttcatttttt-----cagtttaatgaagggcctcaatttctatttgtgaagaagtacaatacatacatcctggtgacgtataaatt |
234 |
Q |
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| T |
11363221 |
caatttgttcattttttttttccagtttaatgaagggcctcaatttctatttgtgaagaagtgcaatacatacatcctggtgaggtataaatt |
11363313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 17195232 - 17195130
Alignment:
| Q |
108 |
ggcttgatgtctacatagtttgaaatttgattaatgagccaatttgttcat---tttttcagtttaatgaagggcctcaatttctatttgtgaagaagta |
204 |
Q |
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|||||| |||||||||||||||||||| |||||||| | |||||||| | |||||||||||||||||| | ||| | || |||||| |||||||| |
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| T |
17195232 |
ggcttggtgtctacatagtttgaaattcaattaatgaactaatttgtttgtttatttttcagtttaatgaagaggctcgctctccatttgtcaagaagta |
17195133 |
T |
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| Q |
205 |
caa |
207 |
Q |
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||| |
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| T |
17195132 |
caa |
17195130 |
T |
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