View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2840_high_3 (Length: 483)

Name: NF2840_high_3
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2840_high_3
NF2840_high_3
[»] chr3 (39 HSPs)
chr3 (48-467)||(30476270-30476691)
chr3 (254-358)||(33689208-33689312)
chr3 (250-363)||(47677253-47677366)
chr3 (278-363)||(1801472-1801557)
chr3 (254-363)||(43139711-43139820)
chr3 (251-371)||(29031713-29031833)
chr3 (278-363)||(41752991-41753076)
chr3 (278-358)||(47492073-47492153)
chr3 (278-363)||(51046099-51046184)
chr3 (251-363)||(18321678-18321790)
chr3 (251-363)||(55223259-55223371)
chr3 (280-363)||(30734430-30734513)
chr3 (278-364)||(30580782-30580868)
chr3 (254-363)||(49418693-49418802)
chr3 (278-363)||(50550002-50550087)
chr3 (1-49)||(30475953-30476001)
chr3 (290-362)||(50524730-50524802)
chr3 (251-314)||(29031790-29031853)
chr3 (251-314)||(47677331-47677394)
chr3 (250-314)||(1272491-1272555)
chr3 (278-329)||(21024120-21024171)
chr3 (254-308)||(49414505-49414559)
chr3 (290-323)||(45103147-45103180)
chr3 (258-314)||(1801571-1801627)
chr3 (279-314)||(30476550-30476585)
chr3 (282-325)||(45755128-45755171)
chr3 (329-363)||(1801473-1801507)
chr3 (329-371)||(29031733-29031775)
chr3 (329-363)||(41753041-41753075)
chr3 (284-314)||(47492123-47492153)
chr3 (310-363)||(39385746-39385799)
chr3 (251-288)||(55223222-55223259)
chr3 (278-314)||(1801522-1801558)
chr3 (323-363)||(1801566-1801606)
chr3 (278-314)||(30734478-30734514)
chr3 (329-390)||(33689253-33689316)
chr3 (278-314)||(41752990-41753026)
chr3 (278-314)||(43139785-43139821)
chr3 (278-314)||(51046149-51046185)
[»] chr4 (46 HSPs)
chr4 (254-363)||(47404587-47404696)
chr4 (278-363)||(6271729-6271814)
chr4 (278-363)||(23444295-23444380)
chr4 (254-363)||(40789206-40789315)
chr4 (278-363)||(42375037-42375122)
chr4 (278-363)||(47661869-47661954)
chr4 (250-363)||(55089994-55090107)
chr4 (278-363)||(51265472-51265557)
chr4 (254-340)||(50384107-50384193)
chr4 (278-363)||(52028576-52028661)
chr4 (278-363)||(53954637-53954722)
chr4 (254-363)||(31430463-31430569)
chr4 (301-363)||(30861823-30861885)
chr4 (278-362)||(26186042-26186124)
chr4 (278-363)||(35682193-35682278)
chr4 (254-340)||(24006072-24006158)
chr4 (278-364)||(47762634-47762720)
chr4 (280-340)||(25818401-25818461)
chr4 (252-340)||(45591410-45591498)
chr4 (251-337)||(28693922-28694008)
chr4 (279-363)||(31532716-31532800)
chr4 (250-314)||(55090072-55090136)
chr4 (252-314)||(40789179-40789241)
chr4 (278-314)||(3862622-3862658)
chr4 (278-314)||(3871379-3871415)
chr4 (278-314)||(6271728-6271764)
chr4 (278-314)||(23444345-23444381)
chr4 (278-314)||(30861850-30861886)
chr4 (258-314)||(42375016-42375072)
chr4 (278-314)||(47661868-47661904)
chr4 (278-314)||(51265471-51265507)
chr4 (278-310)||(53954636-53954668)
chr4 (278-361)||(44379959-44380042)
chr4 (329-389)||(47404584-47404646)
chr4 (329-363)||(3862623-3862657)
chr4 (329-363)||(3871380-3871414)
chr4 (251-301)||(24006151-24006201)
chr4 (329-363)||(26186043-26186077)
chr4 (280-314)||(26186090-26186124)
chr4 (289-371)||(38714842-38714924)
chr4 (258-312)||(47404663-47404717)
chr4 (329-363)||(55090023-55090057)
chr4 (276-329)||(49469932-49469985)
chr4 (257-314)||(52028554-52028611)
chr4 (278-314)||(35682192-35682228)
chr4 (332-389)||(55089876-55089935)
[»] chr6 (17 HSPs)
chr6 (251-363)||(10521848-10521960)
chr6 (278-363)||(12343127-12343212)
chr6 (257-363)||(551170-551276)
chr6 (280-363)||(17750929-17751012)
chr6 (278-358)||(13043489-13043569)
chr6 (293-363)||(24587488-24587558)
chr6 (278-352)||(24618627-24618701)
chr6 (251-371)||(2315303-2315423)
chr6 (310-363)||(31654332-31654385)
chr6 (254-314)||(31654307-31654367)
chr6 (251-314)||(24618677-24618740)
chr6 (329-363)||(24975779-24975813)
chr6 (278-314)||(551241-551277)
chr6 (279-314)||(24587488-24587523)
chr6 (329-363)||(551192-551226)
chr6 (278-315)||(24975778-24975815)
chr6 (258-314)||(12343106-12343162)
[»] chr5 (34 HSPs)
chr5 (254-363)||(3180062-3180171)
chr5 (250-363)||(16439165-16439278)
chr5 (278-363)||(29699394-29699479)
chr5 (278-363)||(3899866-3899951)
chr5 (278-363)||(16971171-16971256)
chr5 (278-363)||(19655185-19655270)
chr5 (278-389)||(28818916-28819029)
chr5 (257-363)||(19598359-19598464)
chr5 (278-363)||(291124-291209)
chr5 (278-340)||(2953240-2953302)
chr5 (284-358)||(38134405-38134479)
chr5 (278-363)||(12913830-12913915)
chr5 (278-363)||(30117854-30117939)
chr5 (251-363)||(16802471-16802583)
chr5 (278-337)||(2093963-2094022)
chr5 (278-363)||(26662426-26662512)
chr5 (278-363)||(26934021-26934107)
chr5 (254-315)||(6912299-6912360)
chr5 (258-314)||(3899845-3899901)
chr5 (254-314)||(26662401-26662461)
chr5 (254-314)||(26933996-26934056)
chr5 (254-313)||(28818919-28818978)
chr5 (278-363)||(2356301-2356383)
chr5 (278-314)||(12913829-12913865)
chr5 (278-314)||(16439164-16439200)
chr5 (278-314)||(16971170-16971206)
chr5 (278-314)||(29699393-29699429)
chr5 (278-313)||(291123-291158)
chr5 (278-329)||(14167178-14167229)
chr5 (255-314)||(38134449-38134508)
chr5 (291-348)||(2935869-2935926)
chr5 (278-323)||(37325584-37325629)
chr5 (278-314)||(3180136-3180172)
chr5 (278-314)||(19655184-19655220)
[»] chr1 (54 HSPs)
chr1 (250-386)||(29371370-29371517)
chr1 (254-363)||(741504-741613)
chr1 (278-363)||(29179623-29179708)
chr1 (278-363)||(37155073-37155158)
chr1 (278-363)||(48993943-48994028)
chr1 (251-363)||(4609023-4609135)
chr1 (254-362)||(46333948-46334056)
chr1 (278-360)||(5995399-5995481)
chr1 (278-363)||(34062236-34062321)
chr1 (260-371)||(47303414-47303525)
chr1 (278-363)||(44706809-44706895)
chr1 (254-364)||(48498441-48498550)
chr1 (278-363)||(8337877-8337962)
chr1 (251-352)||(9157348-9157449)
chr1 (278-363)||(15220838-15220923)
chr1 (278-363)||(32540774-32540859)
chr1 (279-363)||(17127591-17127675)
chr1 (254-332)||(28928781-28928859)
chr1 (251-336)||(1819488-1819573)
chr1 (251-363)||(5694889-5695000)
chr1 (278-362)||(33219601-33219685)
chr1 (271-363)||(48604966-48605058)
chr1 (281-352)||(45728325-45728396)
chr1 (290-352)||(1091582-1091644)
chr1 (278-363)||(38674531-38674614)
chr1 (290-363)||(49444951-49445022)
chr1 (251-314)||(29371367-29371430)
chr1 (254-312)||(48823887-48823945)
chr1 (278-314)||(37155072-37155108)
chr1 (258-314)||(49444987-49445043)
chr1 (264-323)||(19711192-19711251)
chr1 (301-352)||(36290456-36290507)
chr1 (314-363)||(21630069-21630118)
chr1 (250-314)||(15220809-15220873)
chr1 (278-314)||(21630068-21630104)
chr1 (278-314)||(28395663-28395699)
chr1 (278-314)||(29179673-29179709)
chr1 (258-314)||(46334022-46334078)
chr1 (264-311)||(34062221-34062268)
chr1 (329-363)||(4609073-4609107)
chr1 (251-313)||(32157602-32157664)
chr1 (264-314)||(38674579-38674629)
chr1 (329-371)||(47303472-47303514)
chr1 (278-314)||(741578-741614)
chr1 (282-314)||(5995399-5995431)
chr1 (258-314)||(8337927-8337983)
chr1 (282-314)||(9157340-9157372)
chr1 (319-363)||(28395664-28395708)
chr1 (278-314)||(32540824-32540860)
chr1 (278-314)||(44706860-44706896)
chr1 (278-314)||(46932023-46932059)
chr1 (254-314)||(47303397-47303457)
chr1 (335-371)||(48604966-48605002)
chr1 (278-314)||(48993993-48994029)
[»] chr7 (29 HSPs)
chr7 (257-363)||(34854700-34854806)
chr7 (278-363)||(4290572-4290657)
chr7 (278-363)||(11016896-11016981)
chr7 (254-363)||(27028795-27028904)
chr7 (254-363)||(41018230-41018339)
chr7 (264-363)||(29053326-29053425)
chr7 (278-363)||(7671937-7672022)
chr7 (255-363)||(4649347-4649457)
chr7 (278-363)||(15027569-15027654)
chr7 (278-363)||(42628322-42628407)
chr7 (278-360)||(38975835-38975917)
chr7 (278-358)||(48000769-48000849)
chr7 (257-363)||(10419485-10419591)
chr7 (257-363)||(45231859-45231961)
chr7 (305-363)||(22764753-22764811)
chr7 (278-327)||(48000720-48000769)
chr7 (284-362)||(41945883-41945961)
chr7 (278-314)||(11016895-11016931)
chr7 (278-314)||(27028754-27028790)
chr7 (258-314)||(29053390-29053446)
chr7 (329-363)||(34854722-34854756)
chr7 (329-363)||(48000721-48000755)
chr7 (251-308)||(30165329-30165386)
chr7 (278-311)||(45231929-45231962)
chr7 (278-314)||(7671987-7672023)
chr7 (278-314)||(22764776-22764812)
chr7 (323-363)||(27028755-27028795)
chr7 (278-314)||(27028869-27028905)
chr7 (302-362)||(30217504-30217564)
[»] scaffold0047 (2 HSPs)
scaffold0047 (278-363)||(63784-63869)
scaffold0047 (258-314)||(63763-63819)
[»] chr8 (29 HSPs)
chr8 (254-363)||(34229668-34229777)
chr8 (278-363)||(35440995-35441080)
chr8 (278-363)||(5033188-5033273)
chr8 (278-363)||(5667124-5667209)
chr8 (254-363)||(8243390-8243499)
chr8 (278-364)||(8796448-8796534)
chr8 (278-363)||(10086784-10086869)
chr8 (278-363)||(33841617-33841702)
chr8 (254-345)||(34541805-34541896)
chr8 (278-363)||(39850982-39851067)
chr8 (279-362)||(4958627-4958709)
chr8 (279-363)||(6296632-6296716)
chr8 (278-327)||(31159914-31159963)
chr8 (278-329)||(35031640-35031691)
chr8 (278-328)||(37618753-37618803)
chr8 (278-363)||(45191153-45191238)
chr8 (320-362)||(2581853-2581895)
chr8 (291-363)||(43844510-43844580)
chr8 (254-314)||(6296607-6296667)
chr8 (329-390)||(8243386-8243449)
chr8 (278-314)||(35441045-35441081)
chr8 (278-313)||(5667123-5667158)
chr8 (278-329)||(13470040-13470091)
chr8 (280-314)||(2581853-2581887)
chr8 (329-371)||(34229718-34229760)
chr8 (278-322)||(1880306-1880350)
chr8 (278-314)||(5033187-5033223)
chr8 (278-314)||(22649871-22649907)
chr8 (278-314)||(39850981-39851017)
[»] scaffold0016 (2 HSPs)
scaffold0016 (280-371)||(49731-49822)
scaffold0016 (264-314)||(49779-49829)
[»] chr2 (32 HSPs)
chr2 (278-363)||(6217250-6217335)
chr2 (258-363)||(15011307-15011412)
chr2 (278-363)||(2828611-2828696)
chr2 (278-363)||(16514451-16514536)
chr2 (278-363)||(38933614-38933699)
chr2 (278-362)||(14229379-14229462)
chr2 (278-363)||(29925596-29925681)
chr2 (280-363)||(2893990-2894073)
chr2 (278-363)||(29508716-29508802)
chr2 (279-363)||(6721978-6722062)
chr2 (279-363)||(37762028-37762112)
chr2 (279-363)||(37961733-37961817)
chr2 (278-352)||(14470618-14470692)
chr2 (251-319)||(14464554-14464622)
chr2 (258-363)||(9172987-9173092)
chr2 (279-360)||(24115950-24116031)
chr2 (254-314)||(2828586-2828646)
chr2 (278-329)||(32545849-32545900)
chr2 (257-313)||(2893968-2894024)
chr2 (278-352)||(14892299-14892372)
chr2 (258-314)||(6217300-6217356)
chr2 (254-314)||(14229429-14229488)
chr2 (260-314)||(2143948-2144002)
chr2 (329-363)||(6217251-6217285)
chr2 (284-362)||(8534174-8534252)
chr2 (329-363)||(14229380-14229414)
chr2 (264-314)||(38933599-38933649)
chr2 (278-315)||(33018620-33018657)
chr2 (278-314)||(565335-565371)
chr2 (278-314)||(6721977-6722013)
chr2 (278-314)||(29508767-29508803)
chr2 (278-314)||(29925646-29925682)
[»] scaffold0586 (2 HSPs)
scaffold0586 (278-363)||(7073-7158)
scaffold0586 (278-314)||(7123-7159)
[»] scaffold0161 (1 HSPs)
scaffold0161 (279-363)||(27247-27331)
[»] scaffold1033 (1 HSPs)
scaffold1033 (253-338)||(2265-2350)
[»] scaffold1029 (1 HSPs)
scaffold1029 (253-338)||(2265-2350)
[»] scaffold0481 (1 HSPs)
scaffold0481 (264-339)||(2899-2974)
[»] scaffold0180 (1 HSPs)
scaffold0180 (290-337)||(19160-19207)
[»] scaffold0536 (1 HSPs)
scaffold0536 (278-323)||(4918-4963)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 48 - 467
Target Start/End: Original strand, 30476270 - 30476691
Alignment:
Q  48 tattttttactgcctctaattccttcatgccaagaatatgatccttgctttggaatttagagtacgctcctctgatagtttcatgtttgattcttctatt 147  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  30476270 tattttttattgcctctaattccttcatgccaaaaatatgatccttgctttggaatttggagtacgctcctctcatagtttcatgtttgattcttctatt 30476369  T
Q  148 gtcaatttttatcgaatggactattttgatctttccttcaattttaaatgagatgtcttgtaaatggacagtgagattaaacattagtctctcattgggt 247  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  30476370 gtcaatttttatcgaatagactattttgatctttccttcaattttaaatgagatgtctcgcaaatggacagtgagattaaacattagtctctcattgggt 30476469  T
Q  248 tggggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  30476470 tggggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgt 30476569  T
Q  348 gattgaccaatgtcacataactc--tgtcccccaaatgctacccttccgttagataccaannnnnnnnnnnnnaacatttcaacaaattaccttcttata 445  Q
    |||||||||||||||||||||||  | |||||||||||||||||||| ||| ||||||||             |||||||||||||||||||||||||||    
T  30476570 gattgaccaatgtcacataactctatatcccccaaatgctacccttcggttggataccaatttttctttttttaacatttcaacaaattaccttcttata 30476669  T
Q  446 tccaaaattttaacttggtaat 467  Q
    ||||||||||||||||||||||    
T  30476670 tccaaaattttaacttggtaat 30476691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 33689312 - 33689208
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| ||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  33689312 tagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattga 33689213  T
Q  354 ccaat 358  Q
    |||||    
T  33689212 ccaat 33689208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 250 - 363
Target Start/End: Original strand, 47677253 - 47677366
Alignment:
Q  250 gggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtga 349  Q
    |||||| ||||||||||||| |||| | |||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  47677253 gggataacacttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtga 47677352  T
Q  350 ttgaccaatgtcac 363  Q
    |||| |||||||||    
T  47677353 ttgatcaatgtcac 47677366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 1801472 - 1801557
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  1801472 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 1801557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 43139711 - 43139820
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||     
T  43139711 tagcacttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattgg 43139810  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  43139811 ccaatgtcac 43139820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 29031713 - 29031833
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    ||||| ||||||  ||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||    
T  29031713 ggataacacttgcatgacatagagttaggtgatattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaat 29031812  T
Q  351 tgaccaatgtcacataactct 371  Q
    |||||||| |||| |||||||    
T  29031813 tgaccaatatcacctaactct 29031833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 41753076 - 41752991
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  41753076 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcac 41752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 47492073 - 47492153
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaat 358  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||    
T  47492073 ggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaat 47492153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 51046099 - 51046184
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  51046099 ggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcac 51046184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 18321790 - 18321678
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    ||||| ||||||  ||||| |||| | | ||||||||| |||||||||||||||||||| ||||||| ||||| ||| |||| | ||||| |||||||||    
T  18321790 ggataacacttggatgacatagagttggatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgat 18321691  T
Q  351 tgaccaatgtcac 363  Q
    |||||||||||||    
T  18321690 tgaccaatgtcac 18321678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 55223371 - 55223259
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    |||||||||||| |||||| |||| || |||| ||||| |||||| ||||||||||||||||||||||||||||||| | ||| ||| |   ||||||||    
T  55223371 ggatagcacttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgat 55223272  T
Q  351 tgaccaatgtcac 363  Q
    |||||||| ||||    
T  55223271 tgaccaatatcac 55223259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 30734430 - 30734513
Alignment:
Q  280 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||| ||||| ||| || ||||||||||| ||||||||||    
T  30734430 tgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcac 30734513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 30580782 - 30580868
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcaca 364  Q
    ||||| |||| ||||||| |||||||||||  |||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||    
T  30580782 ggtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcaca 30580868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 49418693 - 49418802
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | ||||| ||||| |||||||||||||| |||  |||||||||||||||||| ||||||||| ||  ||| | |||||    
T  49418693 tagcacttgggtgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatgatattataattga 49418792  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  49418793 ccaatgtcac 49418802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 50550087 - 50550002
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||  |||||| ||||||| |||| |||||||||||||||||| |||||||||||   ||||||||||  |||||||||    
T  50550087 ggtgacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcac 50550002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30475953 - 30476001
Alignment:
Q  1 attattattttgcattcatttgtgagcatcttgatacggttattactta 49  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  30475953 attattattttgcattcatttgtgagcatcttgataccattattactta 30476001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 50524802 - 50524730
Alignment:
Q  290 caatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    |||||||||||| || |||||||||||||||||||||| |||| ||||||| |||| ||||||  ||||||||    
T  50524802 caatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 29031853 - 29031790
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||| |||||||||||||| |||||    
T  29031853 ggatagcacttgtgtgacatagagttaggtgatattggtcaattacaatgtcacaatgtttgtg 29031790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 47677394 - 47677331
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||| |||| | ||||||||||  ||||||||||||||||||| |||||    
T  47677394 ggatagcacttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgtttgtg 47677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 1272491 - 1272555
Alignment:
Q  250 gggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||  |||||| |||| | |||||||||||||||||| | ||||||||||||||||    
T  1272491 gggatagcacttaggtgacatagagtttggtgacattggccaatcaaattgtcacaatgcttgtg 1272555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 21024120 - 21024171
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaa 329  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||| |||||    
T  21024120 ggtgacattggtcaaacacaatgtcacaattcttgtgaaagagagaaaaaaa 21024171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 49414559 - 49414505
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatg 308  Q
    ||||||||| |||||| |||| | |||||||||||||||| ||||||||||||||    
T  49414559 tagcacttgggtgacatagagttgggtgacattggccaattacaatgtcacaatg 49414505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 45103147 - 45103180
Alignment:
Q  290 caatcacaatgtcacaatgcttgtgaaagagaga 323  Q
    ||||||||||||||||||||||||||||||||||    
T  45103147 caatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 1801627 - 1801571
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||||||||||||||||| ||||||| |||||    
T  1801627 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 1801571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 30476585 - 30476550
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| |||||||||||||||||||||||||    
T  30476585 gtgacattggtcaatcacaatgtcacaatgcttgtg 30476550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 45755171 - 45755128
Alignment:
Q  282 acattggccaatcacaatgtcacaatgcttgtgaaagagagaga 325  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||    
T  45755171 acattggccaatcgcaacgtcacaatccttgtgaaagagagaga 45755128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 1801507 - 1801473
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  1801507 acaagcattgtggcattgtgattggccaatgtcac 1801473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 29031775 - 29031733
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcacataactct 371  Q
    |||||||||||| ||||||||||||||||| |||| |||||||    
T  29031775 acaagcattgtgacattgtgattgaccaatatcacctaactct 29031733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 41753041 - 41753075
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  41753041 acaagcattgtggcattgtgattggccaatgtcac 41753075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 314
Target Start/End: Complemental strand, 47492153 - 47492123
Alignment:
Q  284 attggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||||||||||||||    
T  47492153 attggccaatcacaatgtcacaatgcttgtg 47492123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 39385746 - 39385799
Alignment:
Q  310 ttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||| ||||  |||||  ||||||||||| ||||||||||    
T  39385746 ttgtgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtcac 39385799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 55223222 - 55223259
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattgg 288  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  55223222 ggatagcacttgtgtgacatagagttaggtgacattgg 55223259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 1801558 - 1801522
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  1801558 ggtgacattggccaatcacaatgccacaatgtttgtg 1801522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 1801566 - 1801606
Alignment:
Q  323 agaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| |||| ||||||||||||||||||| ||||||||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaatgtcac 1801606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 30734514 - 30734478
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  30734514 ggtgacattggccaatcacaatgtcataatacttgtg 30734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 33689253 - 33689316
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcacataactc--tgtcccccaaatgctaccct 390  Q
    |||||||||||| ||||||||||| ||||||||||  |||||  |||| ||||| |||||||||    
T  33689253 acaagcattgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgctaccct 33689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 41752990 - 41753026
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  41752990 ggtgacattggccaatcacaatgccacaatgtttgtg 41753026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 43139821 - 43139785
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||| |||||| |||||||||||||    
T  43139821 ggtgacattggccaataacaatgccacaatgcttgtg 43139785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 51046185 - 51046149
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| || ||||||||||    
T  51046185 ggtgacattggccaatcacaatgccataatgcttgtg 51046149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 47404587 - 47404696
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  47404587 tagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgattga 47404686  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  47404687 ccaatgtcac 47404696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 6271814 - 6271729
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  6271814 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 6271729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 23444295 - 23444380
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23444295 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 23444380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 254 - 363
Target Start/End: Complemental strand, 40789315 - 40789206
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||     
T  40789315 tagcacttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgg 40789216  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  40789215 ccaatgtcac 40789206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 42375122 - 42375037
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42375122 ggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcac 42375037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 47661954 - 47661869
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  47661954 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 47661869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 250 - 363
Target Start/End: Original strand, 55089994 - 55090107
Alignment:
Q  250 gggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtga 349  Q
    |||||| |||||| |||||| |||| |  |||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  55089994 gggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtga 55090093  T
Q  350 ttgaccaatgtcac 363  Q
    ||||||||||||||    
T  55090094 ttgaccaatgtcac 55090107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 51265557 - 51265472
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  51265557 ggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 51265472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 50384107 - 50384193
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtg 340  Q
    ||||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50384107 tagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtg 50384193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 52028661 - 52028576
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||| ||||| ||||    
T  52028661 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcac 52028576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 53954722 - 53954637
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||| ||||||||||    
T  53954722 ggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgtcac 53954637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 31430463 - 31430569
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |   |||||||||| ||||     
T  31430463 tagcacttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaaac---gtggcattgtaattgg 31430559  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  31430560 ccaatgtcac 31430569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 30861823 - 30861885
Alignment:
Q  301 tcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30861823 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 30861885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 26186042 - 26186124
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||||  |||||||||| |||||||||    
T  26186042 ggtgacattggtcaatcacaatgtcacaatgcttgtgaa--agagagaaacacaagcattgtgaaattgtgattggccaatgtca 26186124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 35682278 - 35682193
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||||| ||||| ||| || ||||||||||| ||||||||||    
T  35682278 ggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcac 35682193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 24006072 - 24006158
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtg 340  Q
    ||||||||| |||||| | || | ||||||||||||||||||||||| |||||||||||||||||||||||||| | || |||||||    
T  24006072 tagcacttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaacataaacattgtg 24006158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 47762720 - 47762634
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcaca 364  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||||| | || ||||||  |||||||||||  ||||||||||    
T  47762720 ggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcaca 47762634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 25818401 - 25818461
Alignment:
Q  280 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtg 340  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  25818401 tgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgtg 25818461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 45591410 - 45591498
Alignment:
Q  252 gatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtg 340  Q
    |||| ||||||||||| | |||| | |||| |||| | |||||| ||||||||||||||||||||||||||||||| |||| |||||||    
T  45591410 gataacacttgtgtgatatagagttgggtggcattcgtcaatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgtg 45591498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 28693922 - 28694008
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcatt 337  Q
    |||||||||||| |||||| | || | | |||||||| ||||||||||| |||||||| |||||||||||||||||| |||| ||||    
T  28693922 ggatagcacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacatt 28694008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 31532716 - 31532800
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||  ||||||||||||||||||   ||| ||||||||||||| |||| ||||||| | |||||||||  |||||||||    
T  31532716 gtgacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcac 31532800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 55090136 - 55090072
Alignment:
Q  250 gggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||| |||||| |||||| |||| |  |||||||||| |||||||||||||||||||||||||    
T  55090136 gggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtg 55090072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 40789179 - 40789241
Alignment:
Q  252 gatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||| ||||||  ||||| |||| | ||||||||||||||||||||||||||||||| |||||    
T  40789179 gataacacttgaatgacatagagtttggtgacattggccaatcacaatgtcacaatgtttgtg 40789241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 3862658 - 3862622
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3862658 ggtgacattggccaatcacaatgccacaatgcttgtg 3862622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 3871415 - 3871379
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3871415 ggtgacattggccaatcacaatgccacaatgcttgtg 3871379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 6271728 - 6271764
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  6271728 ggtgacattggccaatcacaatgccacaatgcttgtg 6271764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 23444381 - 23444345
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  23444381 ggtgacattggccaatcacaatgccacaatgcttgtg 23444345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 30861886 - 30861850
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30861886 ggtgacattggccaatcacaatgccacaatgcttgtg 30861850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 42375016 - 42375072
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||| |||||||||||||    
T  42375016 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttgtg 42375072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 47661868 - 47661904
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  47661868 ggtgacattggccaatcacaatgccacaatgcttgtg 47661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 51265471 - 51265507
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  51265471 ggtgacattggccaatcacaatgccacaatgcttgtg 51265507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 53954636 - 53954668
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgct 310  Q
    |||||||||||||||||||||||||||||||||    
T  53954636 ggtgacattggccaatcacaatgtcacaatgct 53954668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 44380042 - 44379959
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtc 361  Q
    ||||| |||| ||||||||||||| ||||| ||| | ||| |||||||||  ||||||||||| |||| | |||| ||||||||    
T  44380042 ggtgatattgaccaatcacaatgttacaatacttataaaatagagagaaacgcaagcattgtgacattataattggccaatgtc 44379959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 47404646 - 47404584
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcacataactc--tgtcccccaaatgctaccc 389  Q
    |||||||||||| ||||||||||||||||||||||  |||||  |||| ||||| ||||||||    
T  47404646 acaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctaccc 47404584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 3862623 - 3862657
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  3862623 acaagcattgtggcattgtgattggccaatgtcac 3862657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 3871380 - 3871414
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  3871380 acaagcattgtggcattgtgattggccaatgtcac 3871414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 24006201 - 24006151
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgt 301  Q
    |||||||||||| |||||| |||| | |||||||||| |||||||||||||    
T  24006201 ggatagcacttgggtgacatagagttgggtgacattgaccaatcacaatgt 24006151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 26186077 - 26186043
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||| ||||||||||||||||||||||    
T  26186077 acaagcattgtgacattgtgattgaccaatgtcac 26186043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 314
Target Start/End: Complemental strand, 26186124 - 26186090
Alignment:
Q  280 tgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||| ||||||||||||||    
T  26186124 tgacattggccaatcacaatttcacaatgcttgtg 26186090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 371
Target Start/End: Complemental strand, 38714924 - 38714842
Alignment:
Q  289 ccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcacataactct 371  Q
    |||||| ||||||||||||| |||||||||| | ||||| | ||  ||| || ||||||||||| ||||| |||| |||||||    
T  38714924 ccaatctcaatgtcacaatgtttgtgaaagaaatagaaacataaatattatgacattgtgattggccaatatcacctaactct 38714842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 47404717 - 47404663
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttg 312  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||| |||||||||||    
T  47404717 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttg 47404663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 55090057 - 55090023
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||| ||||||||||||||||||||||    
T  55090057 acaagcattgtgacattgtgattgaccaatgtcac 55090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 49469932 - 49469985
Alignment:
Q  276 taggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaa 329  Q
    ||||||||| ||  |||||||| |||||||||  ||||||||||||||||||||    
T  49469932 taggtgacaatgatcaatcacagtgtcacaattattgtgaaagagagagaaaaa 49469985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 52028554 - 52028611
Alignment:
Q  257 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||| |||||| |||| | ||||| ||||||||||||| ||||||||||| |||||    
T  52028554 cacttgggtgacatagagttgggtgatattggccaatcacgatgtcacaatgtttgtg 52028611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 35682192 - 35682228
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  35682192 ggtgacattggccaatcacaatgtcataatacttgtg 35682228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 55089935 - 55089876
Alignment:
Q  332 agcattgtggcattgtgattgaccaatgtcacataactc--tgtcccccaaatgctaccc 389  Q
    ||||||||| ||||||||||||||||||||||  |||||  |||| || |||||||||||    
T  55089935 agcattgtgacattgtgattgaccaatgtcactcaactctatgtcacctaaatgctaccc 55089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 251 - 363
Target Start/End: Original strand, 10521848 - 10521960
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    |||||||||||| |||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||||    
T  10521848 ggatagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgat 10521947  T
Q  351 tgaccaatgtcac 363  Q
    |||||||||||||    
T  10521948 tgaccaatgtcac 10521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 12343212 - 12343127
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  12343212 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatgtcac 12343127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 551170 - 551276
Alignment:
Q  257 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgacca 356  Q
    |||||| ||| || |||| | ||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| |||    
T  551170 cacttgggtggcatagagttgggtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggcca 551269  T
Q  357 atgtcac 363  Q
    |||||||    
T  551270 atgtcac 551276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 17751012 - 17750929
Alignment:
Q  280 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||||||    
T  17751012 tgacattggccgatcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcac 17750929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 13043569 - 13043489
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaat 358  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||  |||||||||||    
T  13043569 ggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacatttcgattgaccaat 13043489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 24587558 - 24587488
Alignment:
Q  293 tcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||    
T  24587558 tcacaatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcac 24587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 24618627 - 24618701
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattg 352  Q
    ||||||||||  |||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||    
T  24618627 ggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattg 24618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 2315303 - 2315423
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    |||||||| ||||||||||   || | ||||||||||  ||||||||||||||||||| ||||||||||||| |||| | ||||||| ||| ||||||||    
T  2315303 ggatagcatttgtgtgacaataagttgggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatggtattgtgat 2315402  T
Q  351 tgaccaatgtcacataactct 371  Q
    |   ||||||||| |||||||    
T  2315403 tattcaatgtcacctaactct 2315423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 31654385 - 31654332
Alignment:
Q  310 ttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 31654332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 31654307 - 31654367
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||| |||| | |||| | |||||||||||||||||||||||||||||||||||||    
T  31654307 tagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtg 31654367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 24618740 - 24618677
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||| |||||| |||| | |||||| ||| ||||||||||||||||||||||||||    
T  24618740 ggatagcacttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttgtg 24618677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 24975813 - 24975779
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||||||||    
T  24975813 acaagcattgtggcattgtgattgaccaatgtcac 24975779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 551277 - 551241
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  551277 ggtgacattggccaatcacaatgccacaatgcttgtg 551241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 314
Target Start/End: Original strand, 24587488 - 24587523
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| |||||||||||||||||||||||||    
T  24587488 gtgacattggtcaatcacaatgtcacaatgcttgtg 24587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 551226 - 551192
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||| ||||||||||||||||||||||||||||||    
T  551226 acaaacattgtggcattgtgattgaccaatgtcac 551192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 24975778 - 24975815
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtga 315  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  24975778 ggtgacattggtcaatcacaatgccacaatgcttgtga 24975815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 12343106 - 12343162
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||| | ||||||||||| |||||||||||||    
T  12343106 acttgggtgacatagagttgggtgacattagtcaatcacaatgccacaatgcttgtg 12343162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 3180062 - 3180171
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    |||||||||||||||| |||| | ||||||||||  |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  3180062 tagcacttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattga 3180161  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  3180162 ccaatgtcac 3180171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 16439278 - 16439165
Alignment:
Q  250 gggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtga 349  Q
    |||||| || |||||||||| |||| | ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  16439278 gggataacatttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtga 16439179  T
Q  350 ttgaccaatgtcac 363  Q
    ||||||||||||||    
T  16439178 ttgaccaatgtcac 16439165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 29699479 - 29699394
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  29699479 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 29699394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 3899951 - 3899866
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  3899951 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 3899866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 16971256 - 16971171
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  16971256 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 16971171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 19655270 - 19655185
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  19655270 ggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 19655185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 278 - 389
Target Start/End: Complemental strand, 28819029 - 28818916
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcacataactc--tgtcc 375  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||  |||||  ||||     
T  28819029 ggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacccaactctatgtca 28818930  T
Q  376 cccaaatgctaccc 389  Q
    ||||| ||||||||    
T  28818929 cccaagtgctaccc 28818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 363
Target Start/End: Complemental strand, 19598464 - 19598359
Alignment:
Q  257 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgacca 356  Q
    |||||| |||||| |||| | |||||||||  ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  19598464 cacttgggtgacatagagttgggtgacattaaccaatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgacca 19598366  T
Q  357 atgtcac 363  Q
    |||||||    
T  19598365 atgtcac 19598359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 291209 - 291124
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||  ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  291209 ggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcac 291124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 2953302 - 2953240
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2953302 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtg 2953240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 38134405 - 38134479
Alignment:
Q  284 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaat 358  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  38134405 attggccaatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaat 38134479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 12913915 - 12913830
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||||||    
T  12913915 ggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcac 12913830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 30117854 - 30117939
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| |||| |||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  30117854 ggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgtggcattatgattgaccaatatcac 30117939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 16802583 - 16802471
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    |||||||||||  |||| | |||| |  ||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||  |||||  |||||||||    
T  16802583 ggatagcacttaagtgatatagagttgagtgacattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgat 16802484  T
Q  351 tgaccaatgtcac 363  Q
    || ||||||||||    
T  16802483 tggccaatgtcac 16802471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 2093963 - 2094022
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcatt 337  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  2093963 ggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcatt 2094022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 26662512 - 26662426
Alignment:
Q  278 ggtgacattggccaa-tcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| ||||||| |||  |||||||||||  |||||||||    
T  26662512 ggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcac 26662426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 26934107 - 26934021
Alignment:
Q  278 ggtgacattggccaa-tcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| ||||||| |||  |||||||||||  |||||||||    
T  26934107 ggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcac 26934021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 6912299 - 6912360
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtga 315  Q
    |||||||||| ||||| |||| ||| ||||||| | ||||||||||||||||||||||||||    
T  6912299 tagcacttgtatgacatagagttagttgacattagtcaatcacaatgtcacaatgcttgtga 6912360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 3899845 - 3899901
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||||||||||||||||| |||||||||||||    
T  3899845 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtg 3899901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 26662401 - 26662461
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||| |||| | |||||||||| ||||||||||||| ||| ||||||||    
T  26662401 tagcacttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtg 26662461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 26933996 - 26934056
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||| |||| | |||||||||| ||||||||||||| ||| ||||||||    
T  26933996 tagcacttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtg 26934056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 28818919 - 28818978
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgt 313  Q
    ||||||||| |||||| |||| | ||||||||||| |||||||||||||||||| |||||    
T  28818919 tagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatacttgt 28818978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 2356383 - 2356301
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||| ||||||||||||| |||||||  |||||| ||||||||| |  |||||| |||| | ||||||||    
T  2356383 ggtgacattggccaatcaca-tgtcacaatgcttatgaaaga--gagaaacacaagcattataacattgtaattgcctaatgtcac 2356301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 12913829 - 12913865
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||||||||||||| ||||||    
T  12913829 ggtgacattggccaatcacaatgtcacaattcttgtg 12913865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 16439164 - 16439200
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||| |||||||||||||||||||||||||    
T  16439164 ggtgacattggtcaatcacaatgtcacaatgcttgtg 16439200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 16971170 - 16971206
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  16971170 ggtgacattggccaatcacaatgccacaatgcttgtg 16971206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 29699393 - 29699429
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  29699393 ggtgacattggccaatcacaatgccacaatgcttgtg 29699429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 291123 - 291158
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgt 313  Q
    ||||||||||||||||||||||| ||||||||||||    
T  291123 ggtgacattggccaatcacaatgccacaatgcttgt 291158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 14167178 - 14167229
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaa 329  Q
    |||||| ||| | ||||||||||||||||| ||||||||||||||| |||||    
T  14167178 ggtgactttgacgaatcacaatgtcacaatccttgtgaaagagagaaaaaaa 14167229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 38134508 - 38134449
Alignment:
Q  255 agcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||| | |||| |||| | | ||| |||||||||||||||||||||||||||||||    
T  38134508 agcacttgggcgacatagagttggatgatattggccaatcacaatgtcacaatgcttgtg 38134449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 2935869 - 2935926
Alignment:
Q  291 aatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtg 348  Q
    ||||||||||||| |||| |||| ||||| ||||||| |||| ||||||| |||||||    
T  2935869 aatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacattgtg 2935926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 37325584 - 37325629
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagaga 323  Q
    |||| ||||| | ||||||||||||||||| |||||||||||||||    
T  37325584 ggtggcattgacgaatcacaatgtcacaatccttgtgaaagagaga 37325629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 3180172 - 3180136
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  3180172 ggtgacattggtcaatcacaatgccacaatgcttgtg 3180136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 19655184 - 19655220
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  19655184 ggtgacattggccaatcacaatgccacaatgtttgtg 19655220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 54)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 250 - 386
Target Start/End: Complemental strand, 29371517 - 29371370
Alignment:
Q  250 gggatagcacttgtgtgacagagagctaggtgacattgg---------ccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtg 340  Q
    |||||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  29371517 gggatagcacttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtg 29371418  T
Q  341 gcattgtgattgaccaatgtcacataactc--tgtcccccaaatgcta 386  Q
     ||||||||||| |||||||||| ||||||  |||| |||||||||||    
T  29371417 acattgtgattggccaatgtcacctaactctatgtcacccaaatgcta 29371370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 741504 - 741613
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||| | |||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||    
T  741504 tagcacttgcgtgatatagaattaggtgacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcga 741603  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  741604 ccaatgtcac 741613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 29179623 - 29179708
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  29179623 ggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 29179708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 37155158 - 37155073
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  37155158 ggtgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 37155073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 48993943 - 48994028
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  48993943 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcac 48994028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 4609135 - 4609023
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    |||||| |||||||||||| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  4609135 ggatagtacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgat 4609036  T
Q  351 tgaccaatgtcac 363  Q
     |  |||||||||    
T  4609035 gggtcaatgtcac 4609023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 254 - 362
Target Start/End: Original strand, 46333948 - 46334056
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||     
T  46333948 tagcacttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattgg 46334047  T
Q  354 ccaatgtca 362  Q
     ||||||||    
T  46334048 tcaatgtca 46334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 5995481 - 5995399
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgt 360  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  5995481 ggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 5995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 34062321 - 34062236
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  34062321 ggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcac 34062236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 260 - 371
Target Start/End: Complemental strand, 47303525 - 47303414
Alignment:
Q  260 ttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatg 359  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||| || |||||||||||  ||||     
T  47303525 ttgtgtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaata 47303426  T
Q  360 tcacataactct 371  Q
    |||| |||||||    
T  47303425 tcacctaactct 47303414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 44706809 - 44706895
Alignment:
Q  278 ggtgacattggccaatcacaa-tgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  44706809 ggtgacattggccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcac 44706895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 254 - 364
Target Start/End: Complemental strand, 48498550 - 48498441
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | |||||||||| ||||||||||||| || |||||||||||||||||||||| |||| |||||||| ||| |||||||    
T  48498550 tagcacttgggtgacatagagtt-ggtgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattga 48498452  T
Q  354 ccaatgtcaca 364  Q
    |||||||||||    
T  48498451 ccaatgtcaca 48498441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 8337877 - 8337962
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||  |||||||||    
T  8337877 ggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtcac 8337962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 9157449 - 9157348
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    ||||||||||||||||||| |||| | | ||||||||  |||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  9157449 ggatagcacttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgat 9157350  T
Q  351 tg 352  Q
    ||    
T  9157349 tg 9157348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 15220923 - 15220838
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  || ||||||||||||||||||    
T  15220923 ggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgattgaccaatgtcac 15220838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 32540774 - 32540859
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  |||||||||    
T  32540774 ggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcac 32540859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 17127591 - 17127675
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||  |||||||||    
T  17127591 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcac 17127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 28928781 - 28928859
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaa 332  Q
    ||||||||| |||||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  28928781 tagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaa 28928859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 1819488 - 1819573
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcat 336  Q
    ||||||||||||  ||||| |||| | ||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||    
T  1819488 ggatagcacttgaatgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcat 1819573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 363
Target Start/End: Original strand, 5694889 - 5695000
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgat 350  Q
    ||||| |||||| |||||| |||| | ||||||||||| |||||||||| | | ||||||||||||||||||||||| ||||  |||||| |||||| ||    
T  5694889 ggataacacttgagtgacatagagtttggtgacattggtcaatcacaatatta-aatgcttgtgaaagagagagaaacacaaatattgtgacattgtaat 5694987  T
Q  351 tgaccaatgtcac 363  Q
    |||||||||||||    
T  5694988 tgaccaatgtcac 5695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 33219685 - 33219601
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||| ||| |||||||||||  |||||||||||| ||||||||    
T  33219685 ggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtca 33219601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 363
Target Start/End: Original strand, 48604966 - 48605058
Alignment:
Q  271 agagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||||  ||||||||||| |||| | |||| ||||||||||    
T  48604966 agagttaggtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcac 48605058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 45728396 - 45728325
Alignment:
Q  281 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattg 352  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattg 45728325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 1091582 - 1091644
Alignment:
Q  290 caatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattg 352  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattg 1091644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 38674531 - 38674614
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||| |||||| ||||| ||||    
T  38674531 ggtgatattggccaatcacaatgtcacaatgcttgtgaa--agagagaaacacaagcattgtgacattatgattggccaatatcac 38674614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 49444951 - 49445022
Alignment:
Q  290 caatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||    
T  49444951 caatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcattgtgattggccaatgtcac 49445022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 29371367 - 29371430
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  29371367 ggatagcatttgggtgacatagagttaggtgacattggccaatcacaatgtcacaatgtttgtg 29371430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 48823887 - 48823945
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttg 312  Q
    ||||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||    
T  48823887 tagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttg 48823945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 37155072 - 37155108
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||||||||||||||||||||    
T  37155072 ggtgacattggccaatcacaatgtcacaatgcttgtg 37155108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 49445043 - 49444987
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||||||||||||||||| |||||||||||||    
T  49445043 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtg 49444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 19711192 - 19711251
Alignment:
Q  264 gtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagaga 323  Q
    |||||| |||| | |||||||||| ||||||||||||| ||||||| |||||||||||||    
T  19711192 gtgacatagagttgggtgacattgaccaatcacaatgttacaatgcatgtgaaagagaga 19711251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 36290456 - 36290507
Alignment:
Q  301 tcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattg 352  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||||||||||    
T  36290456 tcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattg 36290507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 21630118 - 21630069
Alignment:
Q  314 gaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||| |||||||||||| |||||||||||  |||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcac 21630069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 15220809 - 15220873
Alignment:
Q  250 gggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||| ||||||  ||| | ||||||||||| ||||||| || ||||||||||||||    
T  15220809 gggatagcacttgggtgacatggagttgggtgacattggtcaatcacgatctcacaatgcttgtg 15220873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 21630068 - 21630104
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| ||||||||||||||||||||||||||    
T  21630068 ggtgacattgaccaatcacaatgtcacaatgcttgtg 21630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 28395663 - 28395699
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28395663 ggtgacattgaccaatcacaatgtcacaatgcttgtg 28395699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 29179709 - 29179673
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  29179709 ggtgacattggccaatcacaatgccacaatgcttgtg 29179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 46334078 - 46334022
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | | |||||||| ||||||||||||||||||||||||||    
T  46334078 acttgggtgacatagagttggatgacattgaccaatcacaatgtcacaatgcttgtg 46334022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 34062221 - 34062268
Alignment:
Q  264 gtgacagagagctaggtgacattggccaatcacaatgtcacaatgctt 311  Q
    |||||| |||| | ||||||||||||||||||||||| ||||||||||    
T  34062221 gtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 34062268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 4609073 - 4609107
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||| ||||||||||||||||||||||    
T  4609073 acaagcattgtgacattgtgattgaccaatgtcac 4609107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 32157664 - 32157602
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgt 313  Q
    |||||| |||||  ||||| |||| | ||||||||||| |||||||| |||||||||||||||    
T  32157664 ggatagtacttggatgacatagagtttggtgacattggtcaatcacagtgtcacaatgcttgt 32157602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 38674629 - 38674579
Alignment:
Q  264 gtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||| |||| | ||||| |||||||||||| ||||||||||||||||||    
T  38674629 gtgacatagagttgggtgatattggccaatcataatgtcacaatgcttgtg 38674579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 47303472 - 47303514
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcacataactct 371  Q
    |||| ||||||| |||||||||||||||||||||| |||||||    
T  47303472 acaaacattgtgacattgtgattgaccaatgtcacctaactct 47303514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 741614 - 741578
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||| | |||||||||||||||||||||||    
T  741614 ggtgacattggtcgatcacaatgtcacaatgcttgtg 741578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 5995399 - 5995431
Alignment:
Q  282 acattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||| |||||||||||||    
T  5995399 acattggccaatcacaatgccacaatgcttgtg 5995431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 8337983 - 8337927
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | |||||||||| |||||||||||| ||||||| |||||    
T  8337983 acttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgtttgtg 8337927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 9157340 - 9157372
Alignment:
Q  282 acattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||| ||||||||||||||||||||||||||    
T  9157340 acattgaccaatcacaatgtcacaatgcttgtg 9157372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 28395708 - 28395664
Alignment:
Q  319 agagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||| |||||||||||| |||||||||||  |||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcac 28395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 32540860 - 32540824
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  32540860 ggtgacattgaccaatcacaatgttacaatgcttgtg 32540824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 44706896 - 44706860
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| | |||||||||||    
T  44706896 ggtgacattggccaatcacaatgccgcaatgcttgtg 44706860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 46932023 - 46932059
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  46932023 ggtgacattggccaatcacaatgccacaatgtttgtg 46932059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 47303397 - 47303457
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||| |||| | |||| ||||||| |||| ||||||||||||||| |||| |||||    
T  47303397 tagcacttgagtgatatagagttaggtgatattgaccaatcacaatgtcataatgtttgtg 47303457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 48605002 - 48604966
Alignment:
Q  335 attgtggcattgtgattgaccaatgtcacataactct 371  Q
    |||||| |||||||||||||||||||||| |||||||    
T  48605002 attgtgacattgtgattgaccaatgtcacctaactct 48604966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 48994029 - 48993993
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| |||||||||||| |||||||||||||    
T  48994029 ggtgacattgaccaatcacaatgccacaatgcttgtg 48993993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 34854700 - 34854806
Alignment:
Q  257 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgacca 356  Q
    |||||| |||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  34854700 cacttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgacca 34854799  T
Q  357 atgtcac 363  Q
    |||||||    
T  34854800 atgtcac 34854806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 4290657 - 4290572
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  4290657 ggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcac 4290572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 11016981 - 11016896
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  11016981 ggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 11016896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 27028795 - 27028904
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| | ||| ||||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||    
T  27028795 tagcacttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattga 27028894  T
Q  354 ccaatgtcac 363  Q
    ||||||||||    
T  27028895 ccaatgtcac 27028904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 41018230 - 41018339
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    |||||||||  ||||| |||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||     
T  41018230 tagcacttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattgg 41018329  T
Q  354 ccaatgtcac 363  Q
     |||||||||    
T  41018330 tcaatgtcac 41018339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 29053326 - 29053425
Alignment:
Q  264 gtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||| |||| | ||||||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  29053326 gtgacatagagtttggtgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 29053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 7671937 - 7672022
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  7671937 ggtgacattagccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 7672022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 4649457 - 4649347
Alignment:
Q  255 agcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagaga--gagaaaaacaagcattgtggcattgtgattg 352  Q
    |||| ||| |||||| |||| | ||||||||||| ||||||||||||||| ||||||||||||||||  |||||| ||||||||||| ||||||||||||    
T  4649457 agcaattgagtgacatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattg 4649358  T
Q  353 accaatgtcac 363  Q
    |||||||||||    
T  4649357 accaatgtcac 4649347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 15027654 - 15027569
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||  |||||||||    
T  15027654 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcac 15027569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 42628407 - 42628322
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||    
T  42628407 ggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcac 42628322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 38975917 - 38975835
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgt 360  Q
    ||||||||||  |||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38975917 ggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgt 38975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 48000849 - 48000769
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaat 358  Q
    |||||||||| |||||||||||| |||||||  ||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  48000849 ggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 363
Target Start/End: Complemental strand, 10419591 - 10419485
Alignment:
Q  257 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgacca 356  Q
    |||||| || ||| |||| | ||||||||||||  |||||||||||||||  ||||||||||||||||||| ||||| |||||  |||| ||||||||||    
T  10419591 cacttgggtaacatagagtttggtgacattggctgatcacaatgtcacaaaacttgtgaaagagagagaaacacaagtattgtaacattatgattgacca 10419492  T
Q  357 atgtcac 363  Q
    |||||||    
T  10419491 atgtcac 10419485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 45231859 - 45231961
Alignment:
Q  257 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgacca 356  Q
    |||||| |||||| |||| | |||||||||| |||||||||||| |||     |||||||||||||||||| | |||||||||  ||||||||||| |||    
T  45231859 cacttgggtgacatagagttgggtgacattgaccaatcacaatgccact----ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggcca 45231954  T
Q  357 atgtcac 363  Q
    |||||||    
T  45231955 atgtcac 45231961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 22764753 - 22764811
Alignment:
Q  305 aatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| ||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcac 22764811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 48000720 - 48000769
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaa 327  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  48000720 ggtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 41945961 - 41945883
Alignment:
Q  284 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    ||||| |||||||||||| ||||||||||||||||||| | |||  ||| |||| || |||| |||||||| |||||||    
T  41945961 attggtcaatcacaatgttacaatgcttgtgaaagagaaaaaaacgcaaacattatgacattatgattgactaatgtca 41945883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 11016895 - 11016931
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  11016895 ggtgacattggccaatcacaatgccacaatgcttgtg 11016931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 27028754 - 27028790
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27028754 ggtgacattggacaatcacaatgtcacaatgcttgtg 27028790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 29053446 - 29053390
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||||||||||||||||| ||||||| |||||    
T  29053446 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 29053390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 34854756 - 34854722
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  34854756 acaagcattgtggcattgtgattggccaatgtcac 34854722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 48000755 - 48000721
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||||||| |||||||||    
T  48000755 acaagcattgtggcattgtgattgatcaatgtcac 48000721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 30165386 - 30165329
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatg 308  Q
    |||||| |||||||||| | |||| | ||||||||||| |||||||||||||| ||||    
T  30165386 ggataggacttgtgtgatatagagttgggtgacattggtcaatcacaatgtcataatg 30165329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 45231962 - 45231929
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgctt 311  Q
    |||||||||||||||||||||||| |||||||||    
T  45231962 ggtgacattggccaatcacaatgttacaatgctt 45231929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 7672023 - 7671987
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  7672023 ggtgacattggccaatcacaatgccacaatgtttgtg 7671987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 22764812 - 22764776
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  22764812 ggtgatattggccaatcacaatgtcacaatgtttgtg 22764776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 27028795 - 27028755
Alignment:
Q  323 agaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcac 27028755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 27028905 - 27028869
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  27028905 ggtgacattggtcaatcacaatgtcacaatgtttgtg 27028869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 30217504 - 30217564
Alignment:
Q  302 cacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    |||||||||||||||||||||||||| | || |||| ||  |||||||||| | |||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtca 30217564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 63869 - 63784
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  63869 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 63784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 63763 - 63819
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||||||||||||||||| ||||||| |||||    
T  63763 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 63819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 254 - 363
Target Start/End: Complemental strand, 34229777 - 34229668
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||    
T  34229777 tagcacttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattga 34229678  T
Q  354 ccaatgtcac 363  Q
    |  |||||||    
T  34229677 ctcatgtcac 34229668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 35440995 - 35441080
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  35440995 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 35441080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 5033273 - 5033188
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  5033273 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcac 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 5667209 - 5667124
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  5667209 ggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcac 5667124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 8243390 - 8243499
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattga 353  Q
    ||||||||| |||||| |||| |  |||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8243390 tagcacttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattga 8243489  T
Q  354 ccaatgtcac 363  Q
    |||| |||||    
T  8243490 ccaacgtcac 8243499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 8796534 - 8796448
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcaca 364  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  8796534 ggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcaca 8796448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 10086869 - 10086784
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||| || ||||||||||||||||||||||    
T  10086869 ggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcac 10086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 33841617 - 33841702
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||    
T  33841617 ggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcac 33841702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 34541805 - 34541896
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcatt 345  Q
    ||||||||| |||||| | || | |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  34541805 tagcacttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgtggcatt 34541896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 39851067 - 39850982
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||| | | ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  39851067 ggtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 39850982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 4958709 - 4958627
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||||| |||| |||| || ||||||||||| |||||||||    
T  4958709 gtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtca 4958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 6296716 - 6296632
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||| | |||| | ||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||  |||||||||    
T  6296716 gtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcac 6296632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 31159963 - 31159914
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaa 327  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  31159963 ggtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaa 31159914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 35031640 - 35031691
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaa 329  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  35031640 ggtgacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaaaa 35031691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 37618753 - 37618803
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaa 328  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  37618753 ggtgacattggccaatcacaatgtcacaatccttgtaagagagagagaaaa 37618803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 45191153 - 45191238
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||   |||||||||| |||||||||| ||||||||||||||| |||| ||||||  |||| ||||||  |||||||||    
T  45191153 ggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcac 45191238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 2581895 - 2581853
Alignment:
Q  320 gagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtca 2581853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 43844510 - 43844580
Alignment:
Q  291 aatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| |||||||  ||||||||||  |||||||||| |||||||||||| |||||||||||| |||| ||||    
T  43844510 aatcataatgtcaggatgcttgtga--gagagagaaacacaagcattgtgacattgtgattgatcaatatcac 43844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 6296607 - 6296667
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||  ||||| |||| | |||||||||| ||||||||||||||| ||||||||||    
T  6296607 tagcacttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgcttgtg 6296667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 8243449 - 8243386
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcacataactc--tgtcccccaaatgctaccct 390  Q
    ||||||||||||||||||||||||| |||||||||  |||||  |||| ||||| |||||||||    
T  8243449 acaagcattgtggcattgtgattgatcaatgtcactcaactctatgtcacccaagtgctaccct 8243386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 35441081 - 35441045
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| |||||||||||||    
T  35441081 ggtgacattggccaatcacaatgccacaatgcttgtg 35441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 5667123 - 5667158
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgt 313  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5667123 ggtgacattggtcaatcacaatgtcacaatgcttgt 5667158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 13470091 - 13470040
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaa 329  Q
    ||||||||||| |||||||||||| ||||| ||| | |||||||||||||||    
T  13470091 ggtgacattggtcaatcacaatgttacaatacttataaaagagagagaaaaa 13470040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 2581853 - 2581887
Alignment:
Q  280 tgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||| |||||||||||||    
T  2581853 tgacattggccaatcacaatgccacaatgcttgtg 2581887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 34229718 - 34229760
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcacataactct 371  Q
    ||||||||||||  ||||||||||||||||||||| |||||||    
T  34229718 acaagcattgtgatattgtgattgaccaatgtcacctaactct 34229760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 1880350 - 1880306
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 322  Q
    ||||||||||| |||||||||||||||| | ||| ||||||||||    
T  1880350 ggtgacattggtcaatcacaatgtcacagtccttatgaaagagag 1880306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 5033187 - 5033223
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| |||||||||||| |||||||||||||    
T  5033187 ggtgacattgaccaatcacaatgccacaatgcttgtg 5033223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 22649871 - 22649907
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||| |||||||||| |||||||||||||    
T  22649871 ggtgacattggctaatcacaatgccacaatgcttgtg 22649907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 39850981 - 39851017
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  39850981 ggtgacattggccaatcacaatgccacaatgtttgtg 39851017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 49731 - 49822
Alignment:
Q  280 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcacataactct 371  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  49731 tgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacctaactct 49822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 49829 - 49779
Alignment:
Q  264 gtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  49829 gtgacatagagttaggtgacattggccaatcacaatgccacaatgcttgtg 49779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 6217250 - 6217335
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  6217250 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 6217335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 15011412 - 15011307
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaa 357  Q
    ||||| |||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  15011412 acttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaa 15011313  T
Q  358 tgtcac 363  Q
    | ||||    
T  15011312 tatcac 15011307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 2828696 - 2828611
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||| ||||||||||    
T  2828696 ggtgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcac 2828611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 16514536 - 16514451
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||    
T  16514536 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcac 16514451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 38933699 - 38933614
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  38933699 ggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcac 38933614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 14229379 - 14229462
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  14229379 ggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg-ccaatgtca 14229462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 29925596 - 29925681
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  29925596 ggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 29925681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 2894073 - 2893990
Alignment:
Q  280 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||||||| ||||||||||    
T  2894073 tgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcac 2893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 29508716 - 29508802
Alignment:
Q  278 ggtgacattggccaatcacaa-tgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  29508716 ggtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcac 29508802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 6722062 - 6721978
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||  |||||||||    
T  6722062 gtgatattggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcac 6721978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 37762028 - 37762112
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||  ||||||||||||| |||||||    
T  37762028 gtgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcac 37762112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 37961817 - 37961733
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||| |  |||||||||    
T  37961817 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtcac 37961733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 14470618 - 14470692
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattg 352  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  14470618 ggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattg 14470692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 14464554 - 14464622
Alignment:
Q  251 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaaga 319  Q
    ||||||||||||||||||| |||| |  |||||||||| |||||||||||||||||| |||||||||||    
T  14464554 ggatagcacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttgtgaaaga 14464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 9172987 - 9173092
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaa 357  Q
    ||||| |||||| |||| | |||||||||||   |||| |||| || ||||||| | ||||| ||||||| |||||||||||||||||||||||| ||||    
T  9172987 acttgggtgacatagagttgggtgacattggttcatcagaatgccataatgcttataaaagaaagagaaatacaagcattgtggcattgtgattggccaa 9173086  T
Q  358 tgtcac 363  Q
    | ||||    
T  9173087 tatcac 9173092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 24116031 - 24115950
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgt 360  Q
    |||| ||||| ||||||||||||| ||||||||||||||||| | |||| ||| |||||||  ||||||||||| |||||||    
T  24116031 gtgatattggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaatgt 24115950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 2828586 - 2828646
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||| ||||||| |||| | |||||||||||||||||||||||||| ||||||||||    
T  2828586 tagcacttctgtgacatagagttgggtgacattggccaatcacaatgtcaaaatgcttgtg 2828646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 32545900 - 32545849
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaa 329  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  32545900 ggtgacattggccaatcataatgtcacaatgcttatgaaagagagataaaaa 32545849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 2893968 - 2894024
Alignment:
Q  257 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgt 313  Q
    |||||| |||||| |||| | |||||||||||||||||||||| |||||||||||||    
T  2893968 cacttgggtgacatagagttgggtgacattggccaatcacaatctcacaatgcttgt 2894024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 14892372 - 14892299
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattg 352  Q
    ||||||||||  |||||||||||| ||||| ||| ||||||||||||||| |||| || |||| |||||||||||    
T  14892372 ggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtgattg 14892299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 6217356 - 6217300
Alignment:
Q  258 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||| |||||| |||| | ||||||||||||||||||||||| ||||||| |||||    
T  6217356 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 6217300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 14229488 - 14229429
Alignment:
Q  254 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||| |||||| |||| | | |||||||||| ||||||||||||||||||||||||    
T  14229488 tagcacttgggtgacatagagttggatgacattggc-aatcacaatgtcacaatgcttgtg 14229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 2144002 - 2143948
Alignment:
Q  260 ttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| |||| |  ||||| ||||||||||||||||||| ||||||||||    
T  2144002 ttgtgtgacatagagttgagtgacgttggccaatcacaatgtcataatgcttgtg 2143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 6217285 - 6217251
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  6217285 acaagcattgtggcattgtgattggccaatgtcac 6217251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 8534252 - 8534174
Alignment:
Q  284 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtca 362  Q
    ||||| |||| ||||||||||||| ||||||||| ||||||||| ||||  ||| |  |||||| ||||| ||||||||    
T  8534252 attggtcaattacaatgtcacaattcttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtca 8534174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 14229414 - 14229380
Alignment:
Q  329 acaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||||||||||| ||||||||||||||||||||||    
T  14229414 acaagcattgtgacattgtgattgaccaatgtcac 14229380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 38933599 - 38933649
Alignment:
Q  264 gtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||| |||| | |||||||||| |||||||||||| |||||||||||||    
T  38933599 gtgacatagagttgggtgacattgaccaatcacaatgccacaatgcttgtg 38933649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 33018657 - 33018620
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtga 315  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  33018657 ggtgatattggtcaatcacaatgtcacaatgcttgtga 33018620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 565335 - 565371
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  565335 ggtgacattggccaatcacaatgtcataatccttgtg 565371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 6721977 - 6722013
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  6721977 ggtgacattgaccaatcacaatatcacaatgcttgtg 6722013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 29508803 - 29508767
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| | |||||||||||    
T  29508803 ggtgacattggccaatcacaatgccgcaatgcttgtg 29508767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 29925682 - 29925646
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  29925682 ggtgacattggccaatcacaatgccacaatgtttgtg 29925646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 7073 - 7158
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  7073 ggtgatattagccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 7158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 7159 - 7123
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtg 314  Q
    |||||||||||||||||||||||||||||||||||||    
T  7159 ggtgacattggccaatcacaatgtcacaatgcttgtg 7123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 27247 - 27331
Alignment:
Q  279 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgtggcattgtgattgaccaatgtcac 363  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||    
T  27247 gtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcac 27331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  253 atagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattg 338  Q
    ||||||||||||||||| |||  | || |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  253 atagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattg 338  Q
    ||||||||||||||||| |||  | || |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 2899 - 2974
Alignment:
Q  264 gtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcattgt 339  Q
    |||||| |||| | ||||| |||| |||||||||||||||||||| |||||||||||||||||| |||| ||||||    
T  2899 gtgacatagagttgggtgatattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgt 2974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 19160 - 19207
Alignment:
Q  290 caatcacaatgtcacaatgcttgtgaaagagagagaaaaacaagcatt 337  Q
    ||||||||||||||||||||||||| |||| ||||||| |||| ||||    
T  19160 caatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacatt 19207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 4918 - 4963
Alignment:
Q  278 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagaga 323  Q
    |||||||| | ||||||||||| | |||||||||||||||||||||    
T  4918 ggtgacatcgaccaatcacaatattacaatgcttgtgaaagagaga 4963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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