View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_32 (Length: 235)
Name: NF2840_high_32
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 21287032 - 21287251
Alignment:
| Q |
1 |
ttgcaagaagtggtgcctcattctccataagaaaattaacaattggagttatatataaaatggaagaagtgctaaatgcacctgatgatggaggatagga |
100 |
Q |
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| T |
21287032 |
ttgcaagaagtggtgcctcattctccacaagaaaattaacaattggagttatatataaaatggaagaagtgctaaatgcacctgatgatggaggatagga |
21287131 |
T |
|
| Q |
101 |
acttcccaacaaattcatttgtatagcagttgaaaccttgatttgatgctgtaaattcacagatgtgagtgctgcattaatgttcaacattgctggtaga |
200 |
Q |
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| T |
21287132 |
acttcccaacaaattcatttgtatagcagttgaaaccttgatttgatgctgtaaattggcagatgtgagtgctgcattaatgttcaacattgctggtaga |
21287231 |
T |
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| Q |
201 |
acaaatgttgatgttggatc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
21287232 |
acaaatgttgatgttggatc |
21287251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 29288453 - 29288248
Alignment:
| Q |
11 |
tggtgcctcattctccataagaaaattaacaattggagttatatataaaatggaagaagtgctaaatgcacctgatgatggaggataggaacttcccaac |
110 |
Q |
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| T |
29288453 |
tggtgcctcattatccacaagaaatttaactattggaattatatatgaaattgaagaaggactaaatactccttgtgatggaggatatgaacttcctaac |
29288354 |
T |
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| Q |
111 |
aaattcatttgtatagcagttgaaaccttgatttgatgctgtaaattcacagatgtgagtgctgcattaatgttcaacattgctggtagaacaaatgttg |
210 |
Q |
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| T |
29288353 |
aaattcatttgtatagctgttgaaaccttaatttgattttgtagattggaagatgctagtgctgtataaatgttctgcattgcaagtagaacaaattttg |
29288254 |
T |
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| Q |
211 |
atgttg |
216 |
Q |
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|||||| |
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| T |
29288253 |
atgttg |
29288248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 29253432 - 29253578
Alignment:
| Q |
1 |
ttgcaagaagtggtgcctcattctccataagaaaattaacaattggagttatatataaaatggaagaagtgctaaatgcacctgatgatggaggatagga |
100 |
Q |
| |
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||||||||||||||||||| | | || ||||||| ||| |||| |||||||||| ||| | |||| |||||||| |||| |||||||||||| || |
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| T |
29253432 |
ttgcaagaagtggtgcctcggtgttcacaagaaaaccaactattgaagttatatatggaattgcggaagcactaaatgctcctgctgatggaggatacga |
29253531 |
T |
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| Q |
101 |
acttcccaacaaattcatttgtatagcagttgaaaccttgatttgat |
147 |
Q |
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| T |
29253532 |
gcttcccaacaaacccatatttatagctgttgaaatcttaatttgat |
29253578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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