View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2840_high_4 (Length: 447)

Name: NF2840_high_4
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2840_high_4
NF2840_high_4
[»] chr3 (7 HSPs)
chr3 (17-429)||(7747305-7747717)
chr3 (33-429)||(6725830-6726227)
chr3 (33-429)||(6412534-6412931)
chr3 (34-429)||(6858591-6858987)
chr3 (216-428)||(6595165-6595378)
chr3 (221-429)||(8572570-8572783)
chr3 (257-403)||(6255311-6255460)
[»] scaffold0425 (1 HSPs)
scaffold0425 (34-287)||(15226-15479)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 7747717 - 7747305
Alignment:
Q  17 actaagaacagtgacatattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaag 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7747717 actaagaacagtgacatattttcaaatttcaacaaaggtgggagctaaacgttattgaacggaaatgatttgatattaacattaacaacaatacaagaag 7747618  T
Q  117 gttatannnnnnnacttctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaaga 216  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7747617 gttatatttttttacttctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatattccagcaagtatatcaaga 7747518  T
Q  217 atcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgact 316  Q
    ||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  7747517 atcgtgtcctaaatttcggggccgatagagaaaagagtgatctatcactctagcagacaagcaaacaatcagtttcttcgttaaacttgtatttacgact 7747418  T
Q  317 atatcaatgcaataggttagttgcttctatcctcccattgtaactccaaggttccttcacaaaccagtcatttcaagccttctaatccttttctcgagct 416  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7747417 atatcaatgcaatagattagttgcttctatcctcccattgtaactccaaggttccttcacaaaccagtcatttcaagccttctaatccttttctcgagct 7747318  T
Q  417 tctcatgcctttc 429  Q
    |||||||||||||    
T  7747317 tctcatgcctttc 7747305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 33 - 429
Target Start/End: Original strand, 6725830 - 6726227
Alignment:
Q  33 tattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnact 132  Q
    |||||||| |||||||||||||| |||||||||| |||| | || ||||||| ||||||| ||||||||||||||| |||||||| |||        |||    
T  6725830 tattttcatatttcaacaaaggtgggagctaaaaaatattgtacagaaatgaattgatatgaacattaacaacaattcaagaaggatatgttgttttact 6725929  T
Q  133 tctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaattt 232  Q
    ||||||||||||||||||||||||  |||| || ||||||||||||||||| | ||   |||  ||||| || |||||| || |||| |||||| |||||    
T  6725930 tctttgaaacactttgaaaatccaaaaaacaaaaacataaaatcttctaatggcgatcctcaaattccaccatgtatatgaataatcatctcctaaattt 6726029  T
Q  233 ccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaatagg 332  Q
    || ||||||||||||||| |||| ||| ||| || | |||||||| |||||||||  || ||| ||||||||||| ||  |||||||||  ||||||||     
T  6726030 ccaggccgatacagaaaacagtggtctgtcattccaacagacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaataga 6726129  T
Q  333 ttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagcttctcatgcctttc 429  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  6726130 ttagttgcttctatcctcccattgtaactcaaaggcaccttcacaaatccagtcatttcaagccttcgaatccatttctcgagcttctcatgcctttc 6726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 33 - 429
Target Start/End: Original strand, 6412534 - 6412931
Alignment:
Q  33 tattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnact 132  Q
    |||||||| |||||||| ||||| ||||||||||  ||| |  | ||||||| ||||||||||||||||||||||| |||||||| |||        |||    
T  6412534 tattttcatatttcaacgaaggtgggagctaaaaattattgtgcagaaatgaattgatattaacattaacaacaattcaagaaggatatgttggtttact 6412633  T
Q  133 tctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaattt 232  Q
    ||||||||| ||||||||||||||| |||| || ||||||||||||||||| | ||   |||  ||||| || |||||| ||  ||| |||||| |||||    
T  6412634 tctttgaaatactttgaaaatccagaaaacaaaaacataaaatcttctaatggcgatcctcaaattccaccatgtatatgaaacatcatctcctaaattt 6412733  T
Q  233 ccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaatagg 332  Q
    || ||||||||||||||| |||| ||| |||||| |||||||||| |||||||||  || ||| ||||||||||| ||  |||||||||  ||||||||     
T  6412734 ccaggccgatacagaaaacagtggtctgtcactccagcagacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaataga 6412833  T
Q  333 ttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagcttctcatgcctttc 429  Q
    |||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  6412834 ttagttgcttctatcctcccattgtaactcaaaggtaccttctcaaatccagtcatttcaagccttcgaatccatttctcgagcttctcatgcctttc 6412931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 34 - 429
Target Start/End: Original strand, 6858591 - 6858987
Alignment:
Q  34 attttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnactt 133  Q
    ||||||| |||||||||||||| ||||||||||  |||   || ||||| | ||||||||||||||||||||||||||| |||| |||        ||||    
T  6858591 attttcatatttcaacaaaggtgggagctaaaatttattatacagaaataaattgatattaacattaacaacaatacaataaggatatgttgttttactt 6858690  T
Q  134 ctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaatttc 233  Q
    |||||||||||||  ||||||||| |||  || ||||  |||||||||| | |||||||||| |||| ||| |||||||||||||| || ||| ||||||    
T  6858691 ctttgaaacacttataaaatccagaaaataaaaacatttaatcttctaactttgactttcatattccggcatgtatatcaagaatcatcacctaaatttc 6858790  T
Q  234 cgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaataggt 333  Q
    | ||||||||||||||| |||| ||| |||||| | || ||||| ||||||||| ||| ||| ||||||||||||||| |||||||||  |||||||| |    
T  6858791 caggccgatacagaaaaaagtggtctgtcactccaacaaacaagtaaacaatcattttcttctttaaacttgtatttatgactatatcgctgcaatagat 6858890  T
Q  334 tagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagcttctcatgcctttc 429  Q
    | || |||||||||||||||||||||||| ||||| |||||||||| |||| ||||| ||| |||  ||||| || |||||||||||||||||||||    
T  6858891 ttgtcgcttctatcctcccattgtaactcaaaggtaccttcacaaatccagccattttaagtctttgaatccattgctcgagcttctcatgcctttc 6858987  T

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Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 216 - 428
Target Start/End: Original strand, 6595165 - 6595378
Alignment:
Q  216 aatcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgac 315  Q
    |||| |||||| ||||||| ||| | ||||||||| |||| ||| |||||| |||||||||| |||||||||  || ||| ||||||||||| ||  |||    
T  6595165 aatcatctcctaaatttccaggctggtacagaaaacagtggtctgtcactccagcagacaagcaaacaatcatgttcttctttaaacttgtacttgtgac 6595264  T
Q  316 tatatcaatgcaataggttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgag 414  Q
    ||||||  |||||||| |||||||||||||||||||||||||||||| |||   |||||||||| ||||||||||||||||||| ||||| |||||||||    
T  6595265 tatatcgctgcaatagattagttgcttctatcctcccattgtaactcaaagacaccttcacaaatccagtcatttcaagccttcgaatccatttctcgag 6595364  T
Q  415 cttctcatgccttt 428  Q
    ||||||||||||||    
T  6595365 cttctcatgccttt 6595378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 221 - 429
Target Start/End: Original strand, 8572570 - 8572783
Alignment:
Q  221 tctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatat 320  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||||| |||||||||| ||||||||| | | ||| ||||||||||||||  ||||||||    
T  8572570 tctcctaaatttccaggcggatacagaaaagagtggtctatcactccagcagacaagcaaacaatcattctcttctttaaacttgtatttgtgactatat 8572669  T
Q  321 caatgcaatag----gttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagc 415  Q
    |  ||||||||     ||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||||||  ||||  |||||| |||    
T  8572670 cgctgcaatagattaattagttgcttctatcctcccattgtaagtcaaaggtaccttcacaaatccagtcatttcaagcctttgaatctatttctcaagc 8572769  T
Q  416 ttctcatgcctttc 429  Q
    |||||||| |||||    
T  8572770 ttctcatgtctttc 8572783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 403
Target Start/End: Complemental strand, 6255460 - 6255311
Alignment:
Q  257 tctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaa--tgcaataggttagttgcttctatcctcccat 354  Q
    |||||||||| | |||||||| ||||||||| ||| ||| |||||||||| |||| ||||||||     |||||||| || |||||||| || ||||| |    
T  6255460 tctatcactccaacagacaagcaaacaatcattttcttctttaaacttgtttttatgactatatattgctgcaatagatttgttgcttcgattctcccgt 6255361  T
Q  355 tgtaactccaaggttccttcacaaacc-agtcatttcaagccttctaatc 403  Q
    |||||||| ||||| ||||||| | || |  |||||||||||||||||||    
T  6255360 tgtaactcaaaggtgccttcactaccccaaccatttcaagccttctaatc 6255311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 34 - 287
Target Start/End: Original strand, 15226 - 15479
Alignment:
Q  34 attttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnactt 133  Q
    ||||||| |||||||||||||| ||| ||||||  ||| | || ||||| | ||||||||||||||||||||||||||| |||| |||        ||||    
T  15226 attttcatatttcaacaaaggtgggaactaaaatttattgtacagaaataaattgatattaacattaacaacaatacaataaggatatgttgttttactt 15325  T
Q  134 ctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaatttc 233  Q
    |||||||||||||  ||||||||| |||  || ||||  |||||||||| | |||||||||| |||| ||| |||||||||||||| || ||| ||||||    
T  15326 ctttgaaacacttataaaatccagaaaataaaaacatttaatcttctaactttgactttcatattccggcatgtatatcaagaatcatcacctaaatttc 15425  T
Q  234 cgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatca 287  Q
    | ||||||||||||||| |||| ||| |||||| | || | ||| |||||||||    
T  15426 caggccgatacagaaaaaagtggtctgtcactccaacaaagaagtaaacaatca 15479  T

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