View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_7 (Length: 400)
Name: NF2840_high_7
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 45382144 - 45382517
Alignment:
| Q |
11 |
cagagatataacaaatggtaaacacatccatgagatgcttctagcccctaccttgcataattatacataattgtttgtgagttgtaaacacaaaacgata |
110 |
Q |
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| T |
45382144 |
cagagatataacaaatggtaaacacatccatgag----------cccctaccttgcataattatacataattgttagtgagttgtaaacacaaaacgata |
45382233 |
T |
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| Q |
111 |
aatttgacaggggagaagaaattgaaatcgatacttgggtggatgcagcaggaaagaatggaatgcgaagagattggataatccgagatcgttgtaccaa |
210 |
Q |
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| T |
45382234 |
aatttgacaggggagaagaaattgaaatcgatacttgggtggatgcagcaggaaagaatggaatgcgaagagattggataatccgagatcgttgtaccaa |
45382333 |
T |
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| Q |
211 |
agagatcataactaaagcaacaaggtgcattatttcatatacttttttatgcatccaaaatatgttatgatttataataccaaataatatgttaatagga |
310 |
Q |
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| T |
45382334 |
agagatcataactaaagcaacaaggtgcattatttcatatacttttttatgcatccaaaatatgttatgatttataataccaaataatatgttaatagga |
45382433 |
T |
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| Q |
311 |
aactttgtctttgatacagcacatgggtgataatgaatagagaaacaagaagactatcaaagatacctgaagaagttagaaaag |
394 |
Q |
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| T |
45382434 |
aactttgtctttgatacagcacatgggtgataatgaatagagaaacaagaagactatcaaagatacctgaagaagttagaaaag |
45382517 |
T |
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