View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_high_8 (Length: 391)
Name: NF2840_high_8
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 39503700 - 39504067
Alignment:
| Q |
17 |
agatctggtggttatgattaactaattctgttaaacatctttatactgtcagggcatatgaattaaatccttgtattataaggttatccttcaagagaca |
116 |
Q |
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| T |
39503700 |
agatctgttggttatgattaactaatactgttaaacatctttatactgtcagggcatatgaattaaatccttgtattataaggttatccttcaagagaca |
39503799 |
T |
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| Q |
117 |
aaatcagtttatgctttcatcgtagtattataacgacgtatatgttgataaagaaataattaatgtagttagatagaaatttgaacgaggtcacataata |
216 |
Q |
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| T |
39503800 |
aaatcagtttatgctttcatcgtagtattataatgacgtatatgttgataaagaaataattaatgtagttagatagaaatttgaacaaggtcacataata |
39503899 |
T |
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| Q |
217 |
agagagacaaggaaaaacttaagaaagtcctatatatttgaacgaatataatattatatatttacattacaaaatagatgctcgaaattgggcgcctctg |
316 |
Q |
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| T |
39503900 |
--agagacaaggaaaaacttaagaaagttctatatatttgaacgaatataatattatatatttacattacaaaatagatgctcgatattgggtgcctccg |
39503997 |
T |
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| Q |
317 |
gtttgattttggagcatagacattctgtattgtgtcctcccatttttctcatttgaatgaattgtctgtg |
386 |
Q |
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| T |
39503998 |
gtttgattttggagcatagacattttgtattgtgtcttcccatttttctcatttgaatgaattgtttgtg |
39504067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 41392810 - 41392839
Alignment:
| Q |
157 |
tatgttgataaagaaataattaatgtagtt |
186 |
Q |
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| T |
41392810 |
tatgttgataaagaaataattaatgtagtt |
41392839 |
T |
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