View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_13 (Length: 354)
Name: NF2840_low_13
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 1865699 - 1866032
Alignment:
| Q |
14 |
cttctcctctcatgtttggtgctgatggaaaagttgcgggg-ttaatccaaatatcggagatgcatctgttacaccaatcactaatgttgaacctaactc |
112 |
Q |
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| T |
1865699 |
cttctcctctcatgtttggtgctgatggaaaagttgcgggggttaatccaaatatcggagatgcatatgttacaccaatcactaatgttgaacctaactc |
1865798 |
T |
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| Q |
113 |
acgttctatgaatggagcaattctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatgcttct |
212 |
Q |
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| T |
1865799 |
acgttctgtgaatggagcaattctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatgcttct |
1865898 |
T |
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| Q |
213 |
ttgtttttaggtatgtattctctcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaagtatag |
312 |
Q |
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| T |
1865899 |
ttgtttttaggtatgtattctctcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaagtatag |
1865998 |
T |
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| Q |
313 |
tttgaattaatcaatgcaggtagtagttcatctc |
346 |
Q |
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| T |
1865999 |
tttgaattaatcaatgcaggtagtagttcatctc |
1866032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 1865447 - 1865510
Alignment:
| Q |
14 |
cttctcctctcatgtttggtgctgatggaaaagttgcgg-ggttaatccaaatatcggagatgc |
76 |
Q |
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| T |
1865447 |
cttctcctctcatgtttggcattgatggaaaagctgtagaggttaatccaaatatcggagatgc |
1865510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 35440950 - 35440916
Alignment:
| Q |
15 |
ttctcctctcatgtttggtgctgatggaaaagttg |
49 |
Q |
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| T |
35440950 |
ttctcctcacatgtttggtgctgatggaaaagttg |
35440916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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