View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2840_low_2 (Length: 567)

Name: NF2840_low_2
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2840_low_2
NF2840_low_2
[»] chr4 (21 HSPs)
chr4 (19-557)||(6007249-6007784)
chr4 (89-213)||(1547463-1547587)
chr4 (81-143)||(2460595-2460657)
chr4 (83-138)||(2486310-2486365)
chr4 (82-137)||(2525761-2525816)
chr4 (85-210)||(553925-554050)
chr4 (89-213)||(1552287-1552411)
chr4 (81-149)||(8186117-8186185)
chr4 (83-167)||(8445280-8445364)
chr4 (83-138)||(2381378-2381433)
chr4 (95-210)||(12118059-12118174)
chr4 (98-210)||(7224918-7225027)
chr4 (93-138)||(2391016-2391061)
chr4 (332-367)||(2547321-2547356)
chr4 (370-481)||(8186388-8186499)
chr4 (83-217)||(645266-645400)
chr4 (344-402)||(1755548-1755606)
chr4 (84-138)||(2367678-2367732)
chr4 (76-138)||(2547535-2547597)
chr4 (72-138)||(12126883-12126949)
chr4 (83-172)||(566592-566681)
[»] chr5 (6 HSPs)
chr5 (81-167)||(41900255-41900341)
chr5 (83-214)||(17205883-17206014)
chr5 (86-144)||(32268767-32268825)
chr5 (83-147)||(28660957-28661021)
chr5 (85-134)||(12846943-12846992)
chr5 (83-147)||(29022026-29022090)
[»] chr8 (5 HSPs)
chr8 (86-139)||(32152208-32152261)
chr8 (83-219)||(17626952-17627088)
chr8 (101-207)||(34935768-34935874)
chr8 (77-120)||(45055816-45055859)
chr8 (81-143)||(18318368-18318430)
[»] chr3 (6 HSPs)
chr3 (81-226)||(513433-513578)
chr3 (95-141)||(51112972-51113018)
chr3 (95-147)||(51120425-51120477)
chr3 (83-143)||(51763153-51763213)
chr3 (333-406)||(51763382-51763455)
chr3 (296-404)||(13469604-13469712)
[»] chr7 (3 HSPs)
chr7 (83-143)||(15091356-15091416)
chr7 (83-135)||(10168813-10168865)
chr7 (83-135)||(10176338-10176390)
[»] chr6 (11 HSPs)
chr6 (95-147)||(28935567-28935619)
chr6 (76-149)||(6602481-6602554)
chr6 (92-138)||(7993318-7993364)
chr6 (83-123)||(6395793-6395833)
chr6 (83-123)||(6427440-6427480)
chr6 (83-138)||(10578802-10578857)
chr6 (83-144)||(6424134-6424195)
chr6 (84-145)||(6433082-6433143)
chr6 (83-123)||(6410960-6411000)
chr6 (95-131)||(6437159-6437195)
chr6 (83-147)||(19633338-19633402)
[»] chr2 (2 HSPs)
chr2 (87-147)||(3054759-3054819)
chr2 (370-468)||(1036640-1036738)
[»] chr1 (2 HSPs)
chr1 (83-217)||(33161357-33161491)
chr1 (95-143)||(15837976-15838024)


Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Complemental strand, 6007784 - 6007249
Alignment:
Q  19 atctatcttcaaattcctcatcatcaccaccacctacaatgacaacaaacacagctatttagaatctctctccctcgtctcgaaacagttcctctccatc 118  Q
    |||||||||||||||||||||||   || |||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6007784 atctatcttcaaattcctcatca---ccgccacctatgacgacaacaagcacagctatttagaatctctctccctcgtctcgaaacagttcctctccatc 6007688  T
Q  119 accaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctattcaacaggttccccaacctcacctcccttgacctca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||    
T  6007687 accaacagtctccgattctctctcactatctgtcatccaactctcccttccctccctcgcctattcaacaggttccccaacctcacctcccttaatctca 6007588  T
Q  219 cgcgcttcacgcgttgcttctcccaaaaaagtgaccttgacgcgcttctctgtcaaatctccactttcccattaaacaacatcaaatcaatcaatctgtc 318  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6007587 cgcgcttcacgcgctgcttctcccaaaaaagtgaccttgacacgcttctctgtcaaatctccactttcccattaaaccacatcaaatcaatcaatctgtc 6007488  T
Q  319 aaaccaatctactattccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacattgattatataagtatc 418  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6007487 aaaccaatctactattccttcaaatgggttgcgagctttgtcagaaaaatgtacatctttgacctctctcacgtgttccaacattgattatataagtatc 6007388  T
Q  419 cctgacatagttcttatctctgattgttttcctttactcgaagaacttgatcttagttaccctgaaaatgttgatcttatagtaaatcctttgttttttg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6007387 cctgacatagttcttatctctgattgttttcctttactcgaagaacttgatcttagttaccctgaaaatgttgatcttatagtaaatcctttgttttttg 6007288  T
Q  519 aacttcctgaacaaaagcttcgcaaggttaatctctctg 557  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  6007287 aacttcctgaacagaagcttcgcaaggttaatctttctg 6007249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 1547463 - 1547587
Alignment:
Q  89 tccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctattcaaca 188  Q
    ||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||| | | ||  | ||||| | ||||| |||||  ||||| ||||| |    
T  1547463 tcccttgtctccaaacaattcctctccatcaccaaccgtctccgattctctctcaatgtttggaagccaacacgccctttccttcagcgcctcttcaaaa 1547562  T
Q  189 ggttccccaacctcacctcccttga 213  Q
    ||||| ||||||||| ||| |||||    
T  1547563 ggttctccaacctcaactcgcttga 1547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 2460657 - 2460595
Alignment:
Q  81 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctca 143  Q
    ||||||||||| | ||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  2460657 aatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctca 2460595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 2486365 - 2486310
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    ||||||||||||||||| |||||||| || |||||||||||| |||||||||||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctc 2486310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 2525816 - 2525761
Alignment:
Q  82 atctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattct 137  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||| |||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattct 2525761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 554050 - 553925
Alignment:
Q  85 tctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctattc 184  Q
    ||||||| | ||||| ||||||||| | |||||||||||  ||||| ||||||| |||| |||||   || |||| | |||||  ||||||||||| |||    
T  554050 tctctcctttgtctctaaacagttcttatccatcaccaatcgtctcagattctcactcaatatctcgaattcaacacgccctttacttcctcgccttttc 553951  T
Q  185 aacaggttccccaacctcacctccct 210  Q
     | |||||| ||||||||||||||||    
T  553950 caaaggttcaccaacctcacctccct 553925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 1552287 - 1552411
Alignment:
Q  89 tccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctattcaaca 188  Q
    ||||||||||| |||||||||| ||| |||||| || |||||||||||||||||| | | ||  | ||||| | ||||| ||| |  | ||| ||||| |    
T  1552287 tccctcgtctccaaacagttcccctctatcaccgaccgtctccgattctctctcagtgtttggaagccaacacgccctttcctccgccaccttttcaaaa 1552386  T
Q  189 ggttccccaacctcacctcccttga 213  Q
    ||||| ||||||||| |||||||||    
T  1552387 ggttctccaacctcaactcccttga 1552411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 8186117 - 8186185
Alignment:
Q  81 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatct 149  Q
    ||||||||||  || |||| ||| |||| ||||||||||||| ||||||||| ||||||||||||||||    
T  8186117 aatctctctcggtcatctcaaaaaagtttctctccatcaccagcagtctccggttctctctcactatct 8186185  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 8445280 - 8445364
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctccctt 167  Q
    ||||||||| ||||||| |||||||| |||||  ||| | || |||||| ||||||||||||||| ||| ||||||| |||||||    
T  8445280 tctctctccatcgtctcaaaacagttactctctgtcatcgaccgtctcctattctctctcactatgtgttatccaaccctccctt 8445364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 2381378 - 2381433
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    ||||| ||| ||||||| |||||||| ||||| |||||||||||||||||||||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgattctc 2381433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 12118059 - 12118174
Alignment:
Q  95 gtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctattcaacaggttcc 194  Q
    ||||| |||||||||||||| || || ||| |||| ||||| |||||||| ||||   || ||||  |||| | ||| |||||||||||  |||||||||    
T  12118059 gtctcaaaacagttcctctctatgactaaccgtcttcgattttctctcacaatctccaattcaaccttcccattcctccctcgcctatttgacaggttcc 12118158  T
Q  195 ccaacctcacctccct 210  Q
    | ||||||||||||||    
T  12118159 caaacctcacctccct 12118174  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 7224918 - 7225027
Alignment:
Q  98 tcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctattcaacaggttcccca 197  Q
    ||||||||| |||||||||| ||||||| | ||| ||||||||||||||||| || | |||| ||||||| |    ||||||||||  | ||||| ||||    
T  7224918 tcgaaacagctcctctccattaccaacaatttccaattctctctcactatctatcctgcaacactcccttac---gctcgcctatttcaaaggtttccca 7225014  T
Q  198 acctcacctccct 210  Q
    | |||||||||||    
T  7225015 atctcacctccct 7225027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 2391016 - 2391061
Alignment:
Q  93 tcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||    
T  2391016 tcgtctcgaaacaattactctccatcaccaacaatctccgattctc 2391061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 367
Target Start/End: Complemental strand, 2547356 - 2547321
Alignment:
Q  332 attccttcaaatgggttgcgagctttgtctgaaaag 367  Q
    |||||| |||||||||||||||||||||||||||||    
T  2547356 attcctgcaaatgggttgcgagctttgtctgaaaag 2547321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 8186388 - 8186499
Alignment:
Q  370 tacatctttgacctctctcacgtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaacttgat 469  Q
    |||| |||||||||| ||||| |||||||||||||| | ||| | || | |||||||  | || ||| | |||||||||||||| || |||||||| |||    
T  8186388 tacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcgat 8186487  T
Q  470 cttagttaccct 481  Q
    || ||| |||||    
T  8186488 ctcagtaaccct 8186499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 645400 - 645266
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctat 182  Q
    ||||||||||| || || ||||||||| ||||||||||||||  ||| |   |||||||||| || ||| |||  || | ||||| |||||||||||| |    
T  645400 tctctctcccttgtttccaaacagttcttctccatcaccaaccttcttcacctctctctcaccatatgtgatcagacgcaccctttccttcctcgcctct 645301  T
Q  183 tcaacaggttccccaacctcacctcccttgacctc 217  Q
    |  | |||||  ||||||| | |||||||||||||    
T  645300 ttcaaaggtttaccaaccttaactcccttgacctc 645266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 402
Target Start/End: Complemental strand, 1755606 - 1755548
Alignment:
Q  344 gggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacat 402  Q
    ||||||| |||||| ||| |||||  |||| |||||||||||||||| |||||||||||    
T  1755606 gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat 1755548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 2367678 - 2367732
Alignment:
Q  84 ctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    |||| ||| ||||||| ||||| || ||||||||||||||| |||||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctc 2367732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 2547597 - 2547535
Alignment:
Q  76 tttagaatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    |||| |||| |||||| ||||||| |||||||| || |||||||||||| ||||||| |||||    
T  2547597 tttaaaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctc 2547535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 12126949 - 12126883
Alignment:
Q  72 gctatttagaatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    |||||||| || |||||||| | ||||| ||||| || ||||||||||||||| |||||| ||||||    
T  12126949 gctatttaaaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctc 12126883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 566681 - 566592
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttccctt 172  Q
    ||||||||| | ||||| |||||||| |||||||||||| ||||||| ||||| || ||  ||||||||  ||||||  |||||| ||||    
T  566681 tctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgattttcacttgctatctgtactccaacagtccctttcctt 566592  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 41900255 - 41900341
Alignment:
Q  81 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctccctt 167  Q
    |||||||||| |||||||| |||||||| |||||||||||||||| ||| ||||||||||| || |||||| ||| |||||||||||    
T  41900255 aatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctcttacaatctgtgatcaaactctccctt 41900341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 17206014 - 17205883
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctat 182  Q
    ||||| ||||||||||| |||||||| ||||| |||||| ||||| |||||||||| |||||| ||| | ||| ||| | ||||| | ||  || ||| |    
T  17206014 tctctatccctcgtctccaaacagttactctctatcaccgacagtttccgattctcactcactgtctatgatcaaacacaccctttctttggtcacctct 17205915  T
Q  183 tcaacaggttccccaacctcacctcccttgac 214  Q
    |||| |||||| |||||||||| |||||||||    
T  17205914 tcaaaaggttcaccaacctcacatcccttgac 17205883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 32268825 - 32268767
Alignment:
Q  86 ctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcac 144  Q
    |||||| ||||||| |||||||| ||||||||||||||| |||| ||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattctctctcac 32268767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 28660957 - 28661021
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 147  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||||  |||||| ||||||||    
T  28660957 tctctctcccttgtctcgaagcagttcctctctatcaccaacggtctcaaattctcgctcactat 28661021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  85 tctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgat 134  Q
    |||||||||||| || || ||||||||||||||||||||| |||||||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 29022090 - 29022026
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 147  Q
    ||||||||||||||||| || ||||| ||||| ||| ||||| |||||  |||||||||||||||    
T  29022090 tctctctccctcgtctccaagcagtttctctctatctccaactgtctcaaattctctctcactat 29022026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 32152261 - 32152208
Alignment:
Q  86 ctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctct 139  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32152261 ctctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctct 32152208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 17626952 - 17627088
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctat 182  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||||   ||||||||||||||||||||||  || ||| |||||||||||| ||||  || |    
T  17626952 tctctctccctagtctccaaacacttcctttccatcaccaacaacatccgattctctctcactatctgcgatacaaatctcccttccctccctcatctct 17627051  T
Q  183 tcaacaggttccccaacctcacctcccttgacctcac 219  Q
    |  | |||||||| | ||||||||| |||||| ||||    
T  17627052 ttcaaaggttccctagcctcacctctcttgacttcac 17627088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 101 - 207
Target Start/End: Original strand, 34935768 - 34935874
Alignment:
Q  101 aaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctattcaacaggttccccaacc 200  Q
    ||||| ||||||||| |||||||| ||| |  ||||||||||||||| | | ||| ||| |||||||||||||||||||| ||| | |||||  ||||||    
T  34935768 aaacacttcctctccgtcaccaaccgtcacaaattctctctcactatttctgatcaaaccctcccttcccttcctcgcctcttccaaaggtttaccaacc 34935867  T
Q  201 tcacctc 207  Q
    |||||||    
T  34935868 tcacctc 34935874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 45055816 - 45055859
Alignment:
Q  77 ttagaatctctctccctcgtctcgaaacagttcctctccatcac 120  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||    
T  45055816 ttagagtctctctccctcgtctccaaacacttcctctccatcac 45055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 18318368 - 18318430
Alignment:
Q  81 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctca 143  Q
    ||||||| ||| | ||||| |||||||| ||| || |||||||||||||||||||||| ||||    
T  18318368 aatctctatccgttgtctctaaacagtttctcaccgtcaccaacagtctccgattctcactca 18318430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 226
Target Start/End: Original strand, 513433 - 513578
Alignment:
Q  81 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcct 180  Q
    |||||||||||  |||||| |||||||| |||||||||||||||| ||||||||||||||||||| || ||  || ||| ||||||| ||| ||||||||    
T  513433 aatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctctcactgtccgtattcaaaccctccctttcctccctcgcct 513532  T
Q  181 attcaacaggttccccaacctcacctcccttgacctcacgcgcttc 226  Q
      ||   || ||  |||||||||||| ||| ||||||| |||||||    
T  513533 cctccgtagatttaccaacctcacctacctcgacctcaagcgcttc 513578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 51112972 - 51113018
Alignment:
Q  95 gtctcgaaacagttcctctccatcaccaacagtctccgattctctct 141  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  51112972 gtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 51113018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 51120425 - 51120477
Alignment:
Q  95 gtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 147  Q
    |||||||| ||||||||||| |||||||||  |||||||||||||||||||||    
T  51120425 gtctcgaagcagttcctctctatcaccaaccttctccgattctctctcactat 51120477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 51763153 - 51763213
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctca 143  Q
    ||||||||| |||| || ||||||||||||||||||||| || || |||||||||| ||||    
T  51763153 tctctctccatcgtttccaaacagttcctctccatcacccaccgtttccgattctcactca 51763213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 51763382 - 51763455
Alignment:
Q  333 ttccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacattgat 406  Q
    ||||| ||||||||||||||| ||| ||  |||||  |||| ||||||| |||||||| |||||| ||||||||    
T  51763382 ttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcccacattgat 51763455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 404
Target Start/End: Original strand, 13469604 - 13469712
Alignment:
Q  296 aacatcaaatcaatcaatctgtcaaaccaatctactattccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgtt 395  Q
    ||||||| |||| | ||||| || |||||| | ||| ||||| |||||||||| |||||||| ||  |||||  |||| |  ||||||||||||| ||||    
T  13469604 aacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgtt 13469703  T
Q  396 ccaacattg 404  Q
    || ||||||    
T  13469704 cccacattg 13469712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 15091356 - 15091416
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctca 143  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||    
T  15091356 tctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctctca 15091416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 10168813 - 10168865
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgatt 135  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||| ||| |||||    
T  10168813 tctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 10176338 - 10176390
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgatt 135  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||| ||| |||||    
T  10176338 tctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 28935619 - 28935567
Alignment:
Q  95 gtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 147  Q
    |||||||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  28935619 gtctcgaaacagttcctctctatcaccaacagtctccgattcacactcactat 28935567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 6602481 - 6602554
Alignment:
Q  76 tttagaatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatct 149  Q
    |||| ||||||| ||||||||||| ||||| ||||||||| |||||||| |||||| |||||| || |||||||    
T  6602481 tttaaaatctctatccctcgtctccaaacatttcctctccgtcaccaactgtctcctattctcacttactatct 6602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 7993318 - 7993364
Alignment:
Q  92 ctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||    
T  7993318 ctcgtctccaaacagttcctctccatcaccagccgtctccgattctc 7993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 6395833 - 6395793
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaa 123  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaa 6395793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 6427480 - 6427440
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaa 123  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaa 6427440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 10578802 - 10578857
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 138  Q
    ||||| || |||||||| ||||| ||||||||||| ||||||||||||| ||||||    
T  10578802 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 10578857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 6424195 - 6424134
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcac 144  Q
    ||||| ||||||||||| ||||||||||||||| | ||||||  ||||| |||||| |||||    
T  6424195 tctctttccctcgtctccaaacagttcctctccgtaaccaactctctcctattctcactcac 6424134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 6433143 - 6433082
Alignment:
Q  84 ctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcact 145  Q
    |||| ||||||||||| ||| ||||||||||| ||||||||  ||||| |||||| ||||||    
T  6433143 ctctatccctcgtctccaaatagttcctctccgtcaccaaccatctcctattctcactcact 6433082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 6411000 - 6410960
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaa 123  Q
    ||||||||||||||||| || |||||||||||||| |||||    
T  6411000 tctctctccctcgtctccaagcagttcctctccattaccaa 6410960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 6437195 - 6437159
Alignment:
Q  95 gtctcgaaacagttcctctccatcaccaacagtctcc 131  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctcc 6437159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 19633402 - 19633338
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 147  Q
    ||||| ||||||||||| |||||||||||||| || |||||  |||||| |||||| || |||||    
T  19633402 tctctatccctcgtctccaaacagttcctctcaataaccaattgtctcctattctcactaactat 19633338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 3054819 - 3054759
Alignment:
Q  87 tctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 147  Q
    ||||||||||||| ||||||||| ||| |||||||||| ||||||| ||||||||||||||    
T  3054819 tctccctcgtctctaaacagttcttcttcatcaccaaccgtctccgtttctctctcactat 3054759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 468
Target Start/End: Original strand, 1036640 - 1036738
Alignment:
Q  370 tacatctttgacctctctcacgtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaacttga 468  Q
    |||| ||||||| |||||||  ||||||||||||| || |||| ||| |  |||  | |||||||| |||||||| |||||||| || |||||||||||    
T  1036640 tacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgattgctttcctttccttgaagaacttga 1036738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 33161491 - 33161357
Alignment:
Q  83 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaactctcccttcccttcctcgcctat 182  Q
    ||||| ||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||||  ||    |  |||| | ||||| ||| ||||| || |    
T  33161491 tctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactcaccctcaaaaactcaacacaccctttcctccctcgtctct 33161392  T
Q  183 tcaacaggttccccaacctcacctcccttgacctc 217  Q
    | || |||||| |||||||||||||||||||||||    
T  33161391 tgaaaaggttcaccaacctcacctcccttgacctc 33161357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 15837976 - 15838024
Alignment:
Q  95 gtctcgaaacagttcctctccatcaccaacagtctccgattctctctca 143  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||| ||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgattctccctca 15838024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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