View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_20 (Length: 313)
Name: NF2840_low_20
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 7131698 - 7131978
Alignment:
| Q |
16 |
gatgaacaaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgata |
115 |
Q |
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| T |
7131698 |
gatgaacaaggcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgata |
7131797 |
T |
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| Q |
116 |
aaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagacta |
215 |
Q |
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| T |
7131798 |
aaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagacta |
7131897 |
T |
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| Q |
216 |
aagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttattccagagagatttg |
296 |
Q |
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| T |
7131898 |
aagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttaatccagagagatttg |
7131978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 7154199 - 7154472
Alignment:
| Q |
23 |
aaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagaga |
122 |
Q |
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| T |
7154199 |
aaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaa |
7154298 |
T |
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| Q |
123 |
ccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcat |
222 |
Q |
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| T |
7154299 |
caatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgat |
7154398 |
T |
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| Q |
223 |
gattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttattccagagagatttg |
296 |
Q |
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||| |||| |||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
7154399 |
gataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagagaggtttg |
7154472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 296
Target Start/End: Original strand, 7141508 - 7141702
Alignment:
| Q |
102 |
taaaattagtgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatat |
201 |
Q |
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|||| |||||||| ||||| || || ||||||||| ||||| ||||||| || | || ||| |||| ||| ||||||| || ||||| |||||||| |
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| T |
7141508 |
taaagttagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagcacagaactaaccaaaatagatgggtatgatat |
7141607 |
T |
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| Q |
202 |
accaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttattccagagagatttg |
296 |
Q |
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||||||||| |||| |||| | || |||| ||||| || | ||| |||||| ||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
7141608 |
accaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttg |
7141702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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