View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_24 (Length: 291)
Name: NF2840_low_24
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 7333511 - 7333796
Alignment:
| Q |
9 |
aacagagaaaaagctctgctcatgaaaaaggatgggactaaagaccagacattgtatttgacccaggtatgtgatcacttgaaagagaagctatgtcttg |
108 |
Q |
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| T |
7333511 |
aacagagcaaaagctctgctcatgaaaagggatgggactaaagaccagacattgtatttgatcaatgtatgtgatcaattgaaagagaagctatgccttg |
7333610 |
T |
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| Q |
109 |
ccgttctcgataatgtctcgaaaacaacagattttgataatctatataaattattatatggatctggatggacagatgggagcaggatagtgctgacaac |
208 |
Q |
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| T |
7333611 |
tcgttctcgataatgtctcaaaaacaacagatttagataagctatatagattattatatggatctggatggacagatgggagcaggatagtgctgacaac |
7333710 |
T |
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| Q |
209 |
acgcttcaaggatgtagctttgcatgc---caacagtagcacccctcaccatattcgactgctaatgaaggaagagagttggatgt |
291 |
Q |
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| T |
7333711 |
acgctttaaggatgtggctttgcatgccaacaacagtagcacccctcaccatattcgactgctaatgaaggaagagagttggatgt |
7333796 |
T |
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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 6821196 - 6821468
Alignment:
| Q |
18 |
aaagctctgctcatgaaaaaggatgggactaaagaccagacattgtatttgacccaggtatgtgatcacttgaaagagaagctatgtcttgccgttctcg |
117 |
Q |
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| T |
6821196 |
aaagttctgctcatggaaaacaacgggactaaaaaccaaacattgaccatgaaacaggtacgtggtcatttgaaagataagctctgccttgttgttctag |
6821295 |
T |
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| Q |
118 |
ataatgtctcgaaaacaacagattttgataatctatataaattattatatggatctggatggacagatgggagcaggatagtgctgacaacacgcttcaa |
217 |
Q |
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| T |
6821296 |
ataatgtctcacaaaaaagtgattttaataacctatataaaattttatctgaatctggatggagaaacgggagcaggatagtggtgacaacatgctttaa |
6821395 |
T |
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| Q |
218 |
ggatgtagctttgcatgccaac---agtagcacccctcaccatattcgactgctaatgaaggaagagagttgg |
287 |
Q |
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| T |
6821396 |
agtcattgcctcgcatgtcgacagtagtagcacccctcaccacattcgactgctaacgaaggaagagagttgg |
6821468 |
T |
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