View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_28 (Length: 255)
Name: NF2840_low_28
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 13167943 - 13167779
Alignment:
| Q |
1 |
ctaaaagagatatgtttattgtgactgtgagtggtcctaatgannnnnnnaatagccacttcacatcatacattcattattttttaatggggaagaggaa |
100 |
Q |
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| T |
13167943 |
ctaaaagagatatgtttattgtgactgtgagtggtcgtaatgatttttttaatagccacttcacatcatacattcattattttttaatggggaagaggaa |
13167844 |
T |
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| Q |
101 |
gatagacatctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
165 |
Q |
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| T |
13167843 |
gatagacatttacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
13167779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 13167753 - 13167691
Alignment:
| Q |
182 |
aacgagggccatt-agaaggttgaaattatattaaacctatgccctaatccagctcatgccta |
243 |
Q |
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| T |
13167753 |
aacgagggccatttagaaggttgaaattatattaaacctatgccctaatccagctcatgccta |
13167691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 12850399 - 12850317
Alignment:
| Q |
82 |
ttttaatggggaagaggaagatagacatctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
165 |
Q |
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| T |
12850399 |
ttttaacggggatgaggaagataaactt-tgcttgtttatttagaagaattgatcaaaagagtttcatgtatttacattagaag |
12850317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 12850290 - 12850236
Alignment:
| Q |
190 |
ccattagaaggttgaaatt-atattaaacctatgccctaatccagctcatgccta |
243 |
Q |
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| T |
12850290 |
ccattagaaggttgaaatttatgtaaaacctatgacctaatccagctcatgccta |
12850236 |
T |
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