View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2840_low_3 (Length: 515)

Name: NF2840_low_3
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2840_low_3
NF2840_low_3
[»] chr1 (4 HSPs)
chr1 (114-389)||(27418452-27418727)
chr1 (121-352)||(15983079-15983300)
chr1 (1-66)||(27420086-27420151)
chr1 (417-492)||(27418353-27418428)
[»] chr8 (3 HSPs)
chr8 (1-68)||(40450766-40450833)
chr8 (13-53)||(35758606-35758646)
chr8 (13-68)||(41348722-41348777)
[»] chr2 (2 HSPs)
chr2 (2-42)||(36391152-36391192)
chr2 (13-68)||(29920928-29920983)
[»] chr6 (1 HSPs)
chr6 (2-68)||(21982712-21982776)
[»] chr3 (1 HSPs)
chr3 (1-39)||(8653007-8653045)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 114 - 389
Target Start/End: Complemental strand, 27418727 - 27418452
Alignment:
Q  114 tttgatacagaagctgctcaaaagcttatcaaaattttaaactttactacttcagatcctacttgttccaattagagaactcttaaaaataatcatgttt 213  Q
    |||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27418727 tttgatacagaagct---caaaagcttatcaaaaatttaaactttactacttcagatcctactagttccaattagagaactcttaaaaataatcatgttt 27418631  T
Q  214 ttt---ccttttgagagcaatttggtagcatgaaattgaagtccaaatctgcctaaaaaatattaatggaaatatcagtatatacgatgggtcttgttta 310  Q
    |||   |||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||     
T  27418630 ttttttccttttgagagcaatttggtagcatggaattgaagtccaaattttcctaataaatattaatggaaatatcagtatatacgatgggtcttgttt- 27418532  T
Q  311 cagctgcacaataacaaataattatggcaattaatgggtccagaagactagaaagacatgaatcac---ctaaaaatctcaa 389  Q
      |||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||   |||||||||||||    
T  27418531 --gctgcataataacaagtaattagggcaattaatgggtctagaagactagaaagacatgaatcacgaactaaaaatctcaa 27418452  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 121 - 352
Target Start/End: Original strand, 15983079 - 15983300
Alignment:
Q  121 cagaagctgctcaaaagcttatcaaaattttaaactttactacttcagatcctacttgttccaattagagaactcttaaaaataatcatgttttttcctt 220  Q
    |||||||| ||| |||||||||||||||||||||||||||        ||||||||||||| || ||||| | ||||| ||||||| || |||| ||| |    
T  15983079 cagaagctactctaaagcttatcaaaattttaaactttac--------atcctacttgttctaactagaggattcttataaataatgatattttatccat 15983170  T
Q  221 ttgagagcaatttggtagcatgaaattgaagtccaaatctgcctaaaaaatattaatggaaatatcagtatatacgatgggtc-ttgtttacagctgcac 319  Q
    |||||||||||||||||||||||||||||||||||||| |  ||| ||||| |||| ||||||||||||||||| |||||||| |||||||   | |||     
T  15983171 ttgagagcaatttggtagcatgaaattgaagtccaaatttatctacaaaatgttaaaggaaatatcagtatatatgatgggtctttgttta---cggcat 15983267  T
Q  320 aataacaaataattatggcaattaatgggtcca 352  Q
    || ||| | |||||||| |||||||||||||||    
T  15983268 aacaacgagtaattatgacaattaatgggtcca 15983300  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27420151 - 27420086
Alignment:
Q  1 gctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaatta 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27420151 gctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaatta 27420086  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 27418428 - 27418353
Alignment:
Q  417 tgggtgaattttataatgtaactgtgttcgaaaccagtattgaggtggaagatagtaaggttgaagacaatgtatt 492  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  27418428 tgggtgaattttgtaatgtaactgtgttcgaaaccaatattgaggtggaagatagtaaggttgaagacaatatatt 27418353  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40450833 - 40450766
Alignment:
Q  1 gctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||| |  |||||||  |||| ||||||||    
T  40450833 gctctcatcaacactcttcaattcttcttgaattgcaaaagatgattaaatcacaaacaataattaaa 40450766  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 35758606 - 35758646
Alignment:
Q  13 actcttcaattcttcttgaattgcaaaagagggctaaatca 53  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  35758606 actcttcaattctccttgaattgcaaaagagggctaaatca 35758646  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 41348777 - 41348722
Alignment:
Q  13 actcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa 68  Q
    ||||||||||| | ||||||||||||||||||| |||||||  |||| ||||||||    
T  41348777 actcttcaattatccttgaattgcaaaagagggttaaatcacaaacaataattaaa 41348722  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 36391152 - 36391192
Alignment:
Q  2 ctctcatcaacactcttcaattcttcttgaattgcaaaaga 42  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36391152 ctctcatcaacactcttcaattcttcttgaattgcaaaaga 36391192  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 29920928 - 29920983
Alignment:
Q  13 actcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa 68  Q
    ||||||||||| | |||||||||||||||||||||||||||  |||| ||||||||    
T  29920928 actcttcaattatccttgaattgcaaaagagggctaaatcacaaacaataattaaa 29920983  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 21982712 - 21982776
Alignment:
Q  2 ctctcatcaacactcttcaattcttcttgaattgcaaaagagggctaaatcaataacagtaattaaa 68  Q
    |||||||||||| ||||||||||||||||||||||  ||||||| |||||||  || ||||||||||    
T  21982712 ctctcatcaacaatcttcaattcttcttgaattgc--aagagggttaaatcataaatagtaattaaa 21982776  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8653007 - 8653045
Alignment:
Q  1 gctctcatcaacactcttcaattcttcttgaattgcaaa 39  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  8653007 gctctcatcaacattgttcaattcttcttgaattgcaaa 8653045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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