View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_34 (Length: 239)
Name: NF2840_low_34
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 176336 - 176128
Alignment:
| Q |
20 |
cagaaaggtatccaaggtgttgctcaactcaaacaactctacaaagataaggttgtatctctctctaaaaatacttgctttactatgttctctttttggg |
119 |
Q |
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| T |
176336 |
cagaaaggtatccaaggtgttgctcaactcaaacaactctacaaagataaggttgtatctctctctaaaaatactttctttactatgttctgtttttggg |
176237 |
T |
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| Q |
120 |
tttttcctccatttatacctactgattgtgtaggtagtatttaaatctatttaggggttgtaactcattttatcaagttgttatactgataccaagaata |
219 |
Q |
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| T |
176236 |
tttttcctccatttatacctactcattgtgtaggtagtatttaaatctatttaggggttgtaactcattttatcaagttgttatactaataccaagaata |
176137 |
T |
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| Q |
220 |
aatcttcat |
228 |
Q |
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| T |
176136 |
aatcttcat |
176128 |
T |
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