View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_35 (Length: 239)
Name: NF2840_low_35
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 38465520 - 38465742
Alignment:
| Q |
1 |
gaaggtggatgtttgatgaggttgtagtgagttg---aagtttgtgttgaaattctgttctgcctgaaaacattagtttccatttgtgaatgttgttttg |
97 |
Q |
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| T |
38465520 |
gaaggtggatgtttgatgaggttgtagtgagttgttgaagttagtgttgaaattctgttctgcctgaaaacattagtttccatttgtgaatgttgttttg |
38465619 |
T |
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| Q |
98 |
agtt-catgtgacactaatttatatgcaatgaaatgaattgtagttgttttaaaatgttgttaataagaggataatgaagtaagagaggcatataagaaa |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38465620 |
agtttcatgtgacactaatttatatgcaatgaaatgaattgtagttgttttaaaatgttgtcaataagaggataatgaagtaagagaggcatataagaaa |
38465719 |
T |
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| Q |
197 |
caagaagtgcatgaatagcatat |
219 |
Q |
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||| ||||||||||||||||||| |
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| T |
38465720 |
caataagtgcatgaatagcatat |
38465742 |
T |
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