View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_39 (Length: 212)
Name: NF2840_low_39
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 35967651 - 35967834
Alignment:
| Q |
15 |
cacagagacctctaccaatcaagaaccagccacattcacacccatcaataaacgcttatgaaagttcaccttcaaactcaaaattatctcaaagagaata |
114 |
Q |
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| T |
35967651 |
cacagagacctctaccaaccaagaaccagccacattcacacccatcaataaacgcttatgaaagttcaccttcaaactcaaaattatctcaaagagaata |
35967750 |
T |
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| Q |
115 |
aaattaacttttatagctctaatattcacctaactttta----taacaatcagagtatcatcaacaaattgtaaatgagaaata |
194 |
Q |
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| T |
35967751 |
agattaacttttatagctctaatattcacccaacttttacgtccaacaatcagagtatcatcaacaaattgtaaatgagaaata |
35967834 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 20796851 - 20796885
Alignment:
| Q |
161 |
cagagtatcatcaacaaattgtaaatgagaaatat |
195 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
20796851 |
cagagtatcatcaacaaattataaatgagaaatat |
20796885 |
T |
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