View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_4 (Length: 501)
Name: NF2840_low_4
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_4 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 2332652 - 2332181
Alignment:
| Q |
18 |
aaaagcacgttgcataagctgataggacgaaactctttgaaactcttggcgatatcaattttcgggatgagaacaaccaaggtctctacaagagtatgat |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2332652 |
aaaagcacgttgcataagccgataggacgaaactctttgaaactcttggcaatatcaattttcaggatgagaacaaccaaggtctctacaagagtatgat |
2332553 |
T |
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| Q |
118 |
caataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332552 |
caataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaat |
2332453 |
T |
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| Q |
218 |
ccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccatagttacaggcaagagaagctggtccatcaagttaatgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
2332452 |
ccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccatagtgacaggcaagagaagctggtccatcaagctaatgc |
2332353 |
T |
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| Q |
318 |
taagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgattggaatagattcataaaaaactttgaggcttcccttttga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
2332352 |
caagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgattgggatagatgcataaaaaactttgaggcttcccttttga |
2332253 |
T |
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| Q |
418 |
gagtgcttgcattcgtgcaccatatgttttccacattcaaaccagaaattttatttcgtcgtcttctgatgatg |
491 |
Q |
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| T |
2332252 |
gagtgcttgcattcgtgcacc--atgttttccacattcaaaccagaaattttatttcgccgtcttctgatgatg |
2332181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 1261668 - 1261909
Alignment:
| Q |
18 |
aaaagcacgttgcataagctgataggacgaaactctttgaaactcttggcgatatcaattttcgggatgagaacaaccaaggtctctacaagagtatgat |
117 |
Q |
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|||||||| ||||||||||||||||||||||| ||| ||||||| | || |||||||||||| || || |||||| |||||||||| ||| |||| ||| |
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| T |
1261668 |
aaaagcacattgcataagctgataggacgaaaatctgtgaaactttgggggatatcaatttttggaataggaacaatcaaggtctctgcaatagtaggat |
1261767 |
T |
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| Q |
118 |
caataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaat |
217 |
Q |
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| T |
1261768 |
caatgataccataggcaaaagca--------tcatacaccattttccacacatcatccccaacaatatgccaataagttttgaaaaaaataggttgaaaa |
1261859 |
T |
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| Q |
218 |
ccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
267 |
Q |
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| T |
1261860 |
ccatctggacccggggctttgtaagagtgcattgagaaaatagcatcttt |
1261909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 16363 - 16604
Alignment:
| Q |
18 |
aaaagcacgttgcataagctgataggacgaaactctttgaaactcttggcgatatcaattttcgggatgagaacaaccaaggtctctacaagagtatgat |
117 |
Q |
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|||||||| ||||||||||||||||||| ||| ||| ||||||| | || |||||||||||| || || |||||| |||||||| | ||| |||| ||| |
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| T |
16363 |
aaaagcacattgcataagctgataggacaaaaatctgtgaaactttgggggatatcaatttttggaataggaacaatcaaggtctatgcaatagtaggat |
16462 |
T |
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| Q |
118 |
caataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaat |
217 |
Q |
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| T |
16463 |
caatgataccataggcaaaagca--------tcatacaccattttccagacatcatccccaacactatgccaataagctttgaaaaaaataggttgaaaa |
16554 |
T |
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| Q |
218 |
ccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
267 |
Q |
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| T |
16555 |
ccatctggacccggggctttgtaaaagtgcattgagaaaatagcatcttt |
16604 |
T |
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