View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_8 (Length: 444)
Name: NF2840_low_8
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 38268706 - 38268453
Alignment:
| Q |
12 |
atcatcatgagaacgaacattcacagctgagctgactaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggca |
111 |
Q |
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| T |
38268706 |
atcatcatgagaacgaacattcacagctgagctgaccaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggca |
38268607 |
T |
|
| Q |
112 |
actagagtggcagccgaagcaacagccacgtctgtcttggccatcttctcatccttgttttgtgttgatgaatttgctgttgctgctgcaatggcagcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38268606 |
actagagtggcagccgaagcaacagccacgtctgtcttggccatcttctcatccttgttttgtgttgatgaatttgctgttgctgctgcaatggcagcta |
38268507 |
T |
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| Q |
212 |
tagcagaagcaacagcagccacagtaatagtagcgtgcagctgagcattttgtg |
265 |
Q |
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| T |
38268506 |
tagcagaagcaacagcagccacagtaatagtagcgtgcagctgagcattttgtg |
38268453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 38268414 - 38268292
Alignment:
| Q |
304 |
aaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaacacctgcacttgctcttccaccattgaataatgggtgaatggaattgtttg |
403 |
Q |
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| T |
38268414 |
aaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaacaccggcacttgctcttccaccattgaataatgggtgaatggaattgtttg |
38268315 |
T |
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| Q |
404 |
tccgaaaaaactgcacatacatt |
426 |
Q |
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| T |
38268314 |
tccgaaaaaactgcacatacatt |
38268292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 402
Target Start/End: Complemental strand, 38312216 - 38312118
Alignment:
| Q |
304 |
aaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaacacctgcacttgctcttccaccattgaataatgggtgaatggaattgttt |
402 |
Q |
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| T |
38312216 |
aaccatcttcttacagttttaggtcctgaacaagttgtgctgctgccaacagcagcagttgctcttccaccattagataatgggtgaatggaattgttt |
38312118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 38307292 - 38307166
Alignment:
| Q |
56 |
caaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagccacgtctgtcttggccat |
155 |
Q |
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|||||||||||| |||||| ||||||||||| ||||||||||| |||||||| | | || || ||||| ||||||||||||| ||| || |||| ||| |
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| T |
38307292 |
caaggtggtcgcactcagcccccattgcttcagcagcctccactcattgtgcttccagtaatgttgcagctgaagcaacagccatgtcagttttgggcat |
38307193 |
T |
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| Q |
156 |
cttctcatccttgttttgtgttgatga |
182 |
Q |
| |
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|||| |||||||| |||||||||| |
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| T |
38307192 |
tgtctcgcccttgtttggtgttgatga |
38307166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 38271319 - 38271260
Alignment:
| Q |
362 |
ttgctcttccaccattgaataatgggtgaatggaat-tgtttgtccgaaaaaactgcaca |
420 |
Q |
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|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
38271319 |
ttgctcttccaccaatgaataattggtgaatggaatgagtttgtccgaaaaaactgcaca |
38271260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 38312463 - 38312312
Alignment:
| Q |
28 |
acattcacagctgagctgactaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccg |
127 |
Q |
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|||||| |||||||||| || || || ||||||| || | || ||||| |||||||| ||||||||| ||||| || | | ||||| ||||||||| |
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| T |
38312463 |
acattcgcagctgagctaaccacagaagcaaggttgtaacacttagctcacattgctttggcagcctcaacacactgcaccgtaactaatatggcagccg |
38312364 |
T |
|
| Q |
128 |
aagcaacagccacgtctgtcttggccatcttctcatccttgttttgtgttga |
179 |
Q |
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|||||| | ||| || ||||||| | ||||| ||||||||| || ||||||| |
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| T |
38312363 |
aagcaatatccatgtttgtcttgtctatcttttcatccttgattggtgttga |
38312312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 31707429 - 31707634
Alignment:
| Q |
55 |
gcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagccacgtctgtcttggcca |
154 |
Q |
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|||||||| || | |||||||||||||||||| ||||| || |||||||| || |||| || || || || ||||| ||||||| || ||||| |||| |
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| T |
31707429 |
gcaaggtgttctctctcagctcccattgcttcagcagcttcaacacattgagcagcaataagtgttgctgcagaagccacagccatatcagtcttagcca |
31707528 |
T |
|
| Q |
155 |
tcttctcatccttgttttgtgttgatgaatttgctgttgctgctgcaatggcagctatagcagaagcaacagcagccacagtaatagtagcgtgcagctg |
254 |
Q |
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| ||||||||||| || |||| | ||| |||||||||||| | || || || | ||||||||||||||||| |||| ||||| ||| || || || |
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| T |
31707529 |
ttttctcatccttattaggtgtagttgatgctgctgttgctgcagtgatagctgcaactgcagaagcaacagcagctacagaaatagcagcatgaagttg |
31707628 |
T |
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| Q |
255 |
agcatt |
260 |
Q |
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|||||| |
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| T |
31707629 |
agcatt |
31707634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 15453162 - 15453291
Alignment:
| Q |
28 |
acattcacagctgagctgactaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccg |
127 |
Q |
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||||||||||| ||||| || ||||| ||| ||| ||||||||||| ||||| || | |||||||| |||||||| || || || | |||||||||| |
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| T |
15453162 |
acattcacagcagagctaaccaccgaatcaatgtgatcgcgctcagcccccatagccacagcagcctcaacacattgagccgccaccaatgtggcagccg |
15453261 |
T |
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| Q |
128 |
aagcaacagccacgtctgtcttggccatct |
157 |
Q |
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| || || |||| ||||||||| ||||||| |
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| T |
15453262 |
acgctaccgccatgtctgtcttcgccatct |
15453291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 31707739 - 31707795
Alignment:
| Q |
362 |
ttgctcttccaccattgaataatgggtgaatggaattgtttgtccgaaaaaactgca |
418 |
Q |
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|||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
31707739 |
ttgctcttgtaccattgaataaagggtgtatggaattgtttgcacgaaaaaactgca |
31707795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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