View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2840_low_9 (Length: 404)
Name: NF2840_low_9
Description: NF2840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2840_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 7333787 - 7334172
Alignment:
| Q |
1 |
agttggatgttatttcagaaggtggccagcagaaggttagaaccaacagaggaaagtttagcaaaaaaggtagtgggaaaatgtgggggcttaccattgg |
100 |
Q |
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| T |
7333787 |
agttggatgttatttcagaaggtggccagcagaaggttagaaccaaaagaggaaagtttagcaaaaaagttagtgggaaaatgtgggggcttaccattgg |
7333886 |
T |
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| Q |
101 |
ccatcttatctcttgggtgtgtcatatcagcgaatggtacgactccaacgagtttatcatgggtgcttgaccaaatcaatcatggccatttcaaaaaata |
200 |
Q |
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| T |
7333887 |
ccatcttatctcttgggtgtgtcatatcagcgaatggtacaactccaacgagtttatcatgggtgcttgaccaaatcaatcatggccatttcaaaaaata |
7333986 |
T |
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| Q |
201 |
ttggctgcaaccaaaagagaacagggaagagtcgagtaatactatgagggactgtctctattgctttacaaacttcccattagactatgaaatcccagca |
300 |
Q |
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| T |
7333987 |
ttggctgcaaccaaaagataacagggaagagttgagtaatactatgagggactgtctctattgctttacaaacttcccattagactatgaaatcccagca |
7334086 |
T |
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| Q |
301 |
aggagattagtcaatctatgggttggagaaggattggtacaacagaacaacggaaagacacctgaagacactgcagagagttatct |
386 |
Q |
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| T |
7334087 |
aggagattagtcaatctatgggttggagaaggattggtacaacaaaacaacggaaagacacctgaagacactgcagagagttatct |
7334172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 6821728 - 6821821
Alignment:
| Q |
245 |
tgagggactgtctctattgctttacaaacttcccattagactatgaaatcccagcaaggagattagtcaatctatgggttggagaaggattggt |
338 |
Q |
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| T |
6821728 |
tgaggaactgtctctattactttacaaaatttccattagactatgaaatctcggcaaggagattagtcaatctatgggttggagaaggattggt |
6821821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 6821532 - 6821611
Alignment:
| Q |
52 |
gaaagtttagcaaaaaaggtagtgggaaaatgtgggggcttaccattggccatcttatctcttgggtgtgtcatatcagc |
131 |
Q |
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|||| ||| ||||| ||||||||||||||||||||||| || ||| || ||| |||||||||||| |||||| ||||| |
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| T |
6821532 |
gaaaattttgcaaagaaggtagtgggaaaatgtgggggattgatattagcaatcatatctcttgggtttgtcatgtcagc |
6821611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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