View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2841_high_6 (Length: 207)
Name: NF2841_high_6
Description: NF2841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2841_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 14691210 - 14691034
Alignment:
| Q |
17 |
caccttgatcatccttgctccttttcatgggaggctcaattatttgcaaaggagcagcatccacaatctctttttcttgaaaagcagtaatcccagcatc |
116 |
Q |
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| T |
14691210 |
caccttgatcatccttgctccttttcatgggaggctcaattatttgcaaaggagtagcatccacaatctctttttcttgaaaagcagtaatcccagcatc |
14691111 |
T |
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| Q |
117 |
agccagagcctcacaaatcttcaatgatttctccaattcaccatttttcacctcagatgcatttttctcattctctg |
193 |
Q |
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| T |
14691110 |
agccagagcctcacaaatcttcaatgatttctccaattcactatttttcacctcagatgcatttttctcattctctg |
14691034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 14682792 - 14682618
Alignment:
| Q |
17 |
caccttgatcatccttgctccttttcatgggaggctcaattatttgcaaaggagcagcatccacaatctctttttcttgaaaagcagtaatcccagcatc |
116 |
Q |
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||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14682792 |
caccttgatcacccttcctccttttcatgggaggatcaattctttgcaaaggagcagcatccacaatctctttttcttgaaaagctgtaatcccagcatc |
14682693 |
T |
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| Q |
117 |
agccagagcctcacaa---atcttcaatgatttctccaattcaccatttttcacctcagatgcatttttctcatt |
188 |
Q |
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| T |
14682692 |
aacctgagcctcacaattcttcttcattgatttctccaactcactatttttcaccccaaatgcatttttctcatt |
14682618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 41688082 - 41688032
Alignment:
| Q |
141 |
tgatttctccaattcaccatttttcacctcagatgcatttttctcattctc |
191 |
Q |
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| T |
41688082 |
tgatttctctaattcactatttttcacctcacatgcatttttttcattctc |
41688032 |
T |
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