View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2841_low_1 (Length: 429)
Name: NF2841_low_1
Description: NF2841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2841_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 9016861 - 9017025
Alignment:
| Q |
20 |
ggcgggggctggtggtggtggtgctcaacccattacaagtcaaaatgtagcaagaaagggcaaaatcaaccaaattccaagccaataaaaagacataatc |
119 |
Q |
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| T |
9016861 |
ggcgggggctggtggtggtggtgctcaacccattacaagtcaaaatgtagcaagaaaggacaaaatcaaccaaattccaagccaataaaaagacataatc |
9016960 |
T |
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| Q |
120 |
aaccatacaaatttgttttttcacaatttgatgaataagtttcatcatttctattgatttaatga |
184 |
Q |
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| T |
9016961 |
aaccatacaaaattgttttttcacaatttgatgaataagttacatcatttctattgatttaatga |
9017025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 9017057 - 9017184
Alignment:
| Q |
180 |
aatgagcatacactggcggtggtggaatcagaatnnnnnnnnnctcaagttggtcagtaaaataaactacaatatnnnnnnntaatcaaattttaggtgt |
279 |
Q |
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| T |
9017057 |
aatgagcatgcagtggcggtggtggaatcagaataaaaaaaaactcaagctggtcaataaaataaactacaatataaaaaaataatcaaattttaggtgt |
9017156 |
T |
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| Q |
280 |
aataagcataaatgcaaaattttctcat |
307 |
Q |
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| T |
9017157 |
aataagcataaatgcaaaatttgctcat |
9017184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 9017242 - 9017303
Alignment:
| Q |
365 |
tagttttctatgcgatctgagtaatttaaaatcattaataatagatttagaataatctaccc |
426 |
Q |
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| T |
9017242 |
tagttttctatgcgacctgagtaatttaaaatcattaataatagatttagaacaatttaccc |
9017303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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