View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2841_low_2 (Length: 423)
Name: NF2841_low_2
Description: NF2841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2841_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 1629956 - 1630363
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagtataatttaaata |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1629956 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagtataatttaaata |
1630055 |
T |
|
| Q |
97 |
ttataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630056 |
ttataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctat |
1630155 |
T |
|
| Q |
197 |
aagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattgtcattatgaacagcaacctc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630156 |
aagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctc |
1630255 |
T |
|
| Q |
297 |
aatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtac |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630256 |
aatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtac |
1630355 |
T |
|
| Q |
397 |
tgaccaga |
404 |
Q |
| |
|
|| ||||| |
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|
| T |
1630356 |
tgtccaga |
1630363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 158 - 404
Target Start/End: Original strand, 1624142 - 1624388
Alignment:
| Q |
158 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
257 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
258 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624242 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1624341 |
T |
|
| Q |
358 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccaga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624342 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccaga |
1624388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 158 - 404
Target Start/End: Original strand, 1607121 - 1607367
Alignment:
| Q |
158 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
257 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
|
| Q |
258 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607221 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1607320 |
T |
|
| Q |
358 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccaga |
404 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1607321 |
ttagcagcagcatttaaagcagcctgcacagtcttgtactgtccaga |
1607367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 160 - 404
Target Start/End: Complemental strand, 10820160 - 10819916
Alignment:
| Q |
160 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcac |
259 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
260 |
caaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctctt |
359 |
Q |
| |
|
| |||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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|
| T |
10820060 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
10819961 |
T |
|
| Q |
360 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccaga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
10819960 |
agcagcagcatttaaagcagcttgcacagtcttgtactgtccaga |
10819916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10820742 - 10820598
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataatttaaatattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||| ||| ||||||||||||||||| |
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|
| T |
10820742 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataatttaaatattat |
10820647 |
T |
|
| Q |
101 |
aaacctatcttattataaaaatttagaacttcaaatgataaaataaaaa |
149 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||||||||| |
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|
| T |
10820646 |
aaacctatcttagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1606658 - 1606689
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagag |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1606658 |
ccatcaatacctaaatttaaatgatccaagag |
1606689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 169 - 404
Target Start/End: Original strand, 18785179 - 18785414
Alignment:
| Q |
169 |
tataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagca |
268 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
269 |
taatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
368 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
18785378 |
T |
|
| Q |
369 |
atttaaagcagcttgcacagtcttgtactgaccaga |
404 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
18785379 |
atttagagcagcttgcacagtcttgtactgtccaga |
18785414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 383
Target Start/End: Original strand, 12803384 - 12803590
Alignment:
| Q |
177 |
acctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattg |
276 |
Q |
| |
|
|||||| || ||||||||||| || ||| ||||| |||||||| ||||| ||||||||| | |||||| | |||||||| |||| ||||||||| |
|
|
| T |
12803384 |
acctgcagtggcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatatta |
12803483 |
T |
|
| Q |
277 |
tcatt-atgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaa |
375 |
Q |
| |
|
||||| || | ||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| | |
|
|
| T |
12803484 |
tcattcatcttcc-caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttata |
12803582 |
T |
|
| Q |
376 |
gcagcttg |
383 |
Q |
| |
|
||| |||| |
|
|
| T |
12803583 |
gcatcttg |
12803590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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