View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2841_low_4 (Length: 349)
Name: NF2841_low_4
Description: NF2841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2841_low_4 |
 | |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 33664014 - 33664340
Alignment:
| Q |
1 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33664014 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttt |
33664113 |
T |
|
| Q |
101 |
tggcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33664114 |
tggcaatgttttttgtaaacatgaagaaaattatacgtagtgtgttccatactttctttgtaactaccattgtttggtttgtttcaatttccattgttgt |
33664213 |
T |
|
| Q |
201 |
aacggtttgatgagtttgtgagtgnnnnnnnngttttgttgagagagagaatgagaatgtgtgaacgtatgtgattggtttgtgatatggtttgtgtttg |
300 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
33664214 |
aacggtttgataagtttgtgagtg---tttttgttttgttgagagagagaatgagaatgtgtgaacgtgtgtaattggattgtgatatggtttgtgtttg |
33664310 |
T |
|
| Q |
301 |
tgataggaggagttggagttaggtggtatat |
331 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
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| T |
33664311 |
tgatagga-gagttggagttaggtggtatat |
33664340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 33685804 - 33686142
Alignment:
| Q |
1 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33685804 |
gtcgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattgtgctaccattttgcttt |
33685903 |
T |
|
| Q |
101 |
tggcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33685904 |
tggctatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgt |
33686003 |
T |
|
| Q |
201 |
aacggtttgatgagtttgtgagtg--nnnnnnnngttttg-------ttgagagagagaatgagaatgtgtgaacgtatgtgattggtttgtgatatggt |
291 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
33686004 |
aacggtttgatgagtttgtgagtgttttttttttgttttgtagagacttgagagaaagaatgagaataggtgaacgtatgtgattggattgtgatatggt |
33686103 |
T |
|
| Q |
292 |
ttgtgtttgtgataggaggagttggagttaggtggtatat |
331 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
33686104 |
ttgtgtttgtgatagga-gagttggagttaggtggtatat |
33686142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 33674616 - 33674952
Alignment:
| Q |
3 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttg |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
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| T |
33674616 |
cgagtggtggcggagagtgagagtgttggctatagctttgatggcggcgagtttgctacgttttagcaagagattaaattgtgctaccattttgcttttg |
33674715 |
T |
|
| Q |
103 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgtaa |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674716 |
gctatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgtaa |
33674815 |
T |
|
| Q |
203 |
cggtttgatgagtttgtgagtg--nnnnnnnngttttg-------ttgagagagagaatgagaatgtgtgaacgtatgtgattggtttgtgatatggttt |
293 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
33674816 |
cggtttgatgagtttgtgagtgttttttttttgttttgtagagacttgagagaaagaatgagaataggtgaacgtatgtgattggattgtgatatggttt |
33674915 |
T |
|
| Q |
294 |
gtgtttgtgataggaggagttggagttaggtggtatat |
331 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
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| T |
33674916 |
gtgtttgtgatagga-gagttggagttaggtggtatat |
33674952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 33693033 - 33693225
Alignment:
| Q |
3 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttg |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
33693033 |
cgagtggtggcggagagtgagagtgttggctatggctttgatagcggcgagtttgccacgttttagcaagagatttaattgtgctaccattttgcttttg |
33693132 |
T |
|
| Q |
103 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccatt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33693133 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatatccatt |
33693225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 103411 - 103091
Alignment:
| Q |
6 |
gtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttggca |
105 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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|
| T |
103411 |
gtggtggcggagggtgagagggttggctatggctttgatagcggcgagcttgctacgttttagcaagagatttaattgtgctacctttttgcttttggct |
103312 |
T |
|
| Q |
106 |
atgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttccattgttgtaacgg |
205 |
Q |
| |
|
||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
103311 |
atgtttttttttaacattaacaaaattagacgtagtgtgttccatactttctttgttactatcattggttgggttgtttcaatttccattgttgtaacgg |
103212 |
T |
|
| Q |
206 |
tttgatgagtttgtgagtgnnnnnnnngttttgttgagagagagaatgagaatgtgtgaacgtatgtgattggtttgtgatatggtttgtgtttgtgata |
305 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||| |||| ||||| || ||| || ||||||||| |||||||||||||||||||||||||| |
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|
| T |
103211 |
tttgatgagtttgcgtgtgttttttttgttttgttgagagggaga--gagaa--tgagaatgtgtgtgattggattgtgatatggtttgtgtttgtgata |
103116 |
T |
|
| Q |
306 |
ggaggagttggagttaggtggtatat |
331 |
Q |
| |
|
||| ||||||| |||||||||||||| |
|
|
| T |
103115 |
gga-gagttggggttaggtggtatat |
103091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 86745 - 86524
Alignment:
| Q |
3 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttaacaagagatttaattctgctaccattttgcttttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
86745 |
cgagtggtggcggagagctagagtgttggctatggctttgatggcggcgagtttgctacgttttagcaagagatttaattctgctaccattttgctttta |
86646 |
T |
|
| Q |
103 |
gcaatgttttttgtaaacatgaacaaaattatacgtagtgtgttccatactttctttgtaactaccattgcttggtttgtttcaatttcca-------tt |
195 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || |
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|
| T |
86645 |
gctatgttttttgttaacatgaacaaaattatacgcagtgtgttccatactttctttgttactataattagttggtttgtttcaatttccattcttgttt |
86546 |
T |
|
| Q |
196 |
gttgtaacggtttgatgagttt |
217 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
86545 |
gttgtaacggtttgatgagttt |
86524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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