View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2841_low_9 (Length: 245)
Name: NF2841_low_9
Description: NF2841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2841_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 46874589 - 46874369
Alignment:
| Q |
22 |
gtagcaagaataaataaacctattaattgatcacacccaccaatgaggcaatgaccatgtttccaaannnnnnngttaatgcaatacttatccaaatgag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46874589 |
gtagcaagaataaataaacctattaattgatcacacccaccaatgaggcaatgaccatgtttccaaaattctttgttaatgcaatacttatccaaatgag |
46874490 |
T |
|
| Q |
122 |
gtgtgtttccaagagcacaacaagaggtcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttctttttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46874489 |
gtgtgtttccaagagcacaacaagaggtcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttcttt |
46874390 |
T |
|
| Q |
222 |
gcctgctcctcttcctttgct |
242 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46874389 |
gcctgctcctcttcctttgct |
46874369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 46892328 - 46892216
Alignment:
| Q |
108 |
cttatccaaatgaggtgtgtttccaagagcacaacaagagg---tcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaa |
204 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46892328 |
cttatccaaatgaggtgtgtttccacgagcacaacaagagtagttcaatcatcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaa |
46892229 |
T |
|
| Q |
205 |
gtatacgtttctt |
217 |
Q |
| |
|
||||||||||||| |
|
|
| T |
46892228 |
gtatacgtttctt |
46892216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 46865650 - 46865565
Alignment:
| Q |
156 |
tcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttttttgcctgctcctcttcctttgc |
241 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | | |||||||||| ||||| | | |||| || |||||||||||||||||||| |
|
|
| T |
46865650 |
tcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc |
46865565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 27301007 - 27300924
Alignment:
| Q |
156 |
tcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttttttgcctgctcctcttccttt |
239 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||||| || ||||||||| |
|
|
| T |
27301007 |
tcaatccaatcaccataaatacgattgatctcgctgaatttcaacccaagtatacgttttttctttgcctgttcatcttccttt |
27300924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 27310878 - 27310808
Alignment:
| Q |
140 |
aacaagaggtcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatac |
210 |
Q |
| |
|
|||||||| |||| | ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
27310878 |
aacaagagttcaatcatcaattcaatcaccataaatacgattgatcttgctgaattttaacccaagtatac |
27310808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 22690037 - 22690086
Alignment:
| Q |
192 |
aatttcaacccaagtatacgtttcttttttgcctgctcctcttcctttgc |
241 |
Q |
| |
|
|||||||||| ||||| ||| ||||| || |||||||||||||||||||| |
|
|
| T |
22690037 |
aatttcaaccaaagtaaacgcttcttcttagcctgctcctcttcctttgc |
22690086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University