View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2842_low_1 (Length: 759)
Name: NF2842_low_1
Description: NF2842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2842_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 556; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 745
Target Start/End: Original strand, 44005576 - 44006310
Alignment:
| Q |
18 |
agatatttcagagatttgtttggataagggaaatgctcattgatcatttggtagatggtgacactggtaatgtaatgccatgatgaacaagttggattca |
117 |
Q |
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| T |
44005576 |
agatctttcagagatttgtttggataagggaaatgctcattgatcatttggtagatggtgacactggtaatgtaatgccatgatgaacaagttggattca |
44005675 |
T |
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| Q |
118 |
gcaacaatcaaggaatgctggaaatggaataagaacatattttattagccgnnnnnnnnnctctttcggtcccattttcagcatcatgaacattattata |
217 |
Q |
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| T |
44005676 |
gcaacaatcaaggaatgctggaaatggaataagaacatattttattagcc-aaaaaaaaactctttcggtcccattttcagcatcatgaacattattata |
44005774 |
T |
|
| Q |
218 |
------------gtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaaaagaatgtaatcc |
305 |
Q |
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| T |
44005775 |
tacattattatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaaaagaatgtaatcc |
44005874 |
T |
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| Q |
306 |
ttataattaaattagtattatgcaaagtctagaggccagaagaggnnnnnnnggaattcctagtgtcatctgcatggctatgttcttacatatccattgt |
405 |
Q |
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| T |
44005875 |
ttataattaaattagtattatgcaaagtctagaggccagaagaggaaaaaaaggaattcctagtgtcatctgcatggctatgttcttacatatccattgt |
44005974 |
T |
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| Q |
406 |
ctttacttttgttggtattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaactgccatgtctat |
505 |
Q |
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| T |
44005975 |
ctttacttttgttgatattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaactgccatgtctat |
44006074 |
T |
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| Q |
506 |
agtaattattactgtgttagctcagctgctgctgttatttttcttgttgtttctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctcaa |
605 |
Q |
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| T |
44006075 |
agtaattattactgtgttagctcagctgctgctgttatttttc---ttgtttctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctcaa |
44006171 |
T |
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| Q |
606 |
agcttcctgtgattaataaattttgctaattcnnnnnnnnnnnnntgtctatagtaatcggatgtttttctttgnnnnnnnctacaaccaaatgttatta |
705 |
Q |
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| T |
44006172 |
agcttcctgtgattaataaattttgctaattc-aaaaaaaaaatatgtctatagtaatcggatgtttttctttgaaaaaaactacaaccaaatgttatta |
44006270 |
T |
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| Q |
706 |
tgaaagtgatcaattgtcctgtctaaagtaacatgatgat |
745 |
Q |
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| T |
44006271 |
tgaaagtgatcaattgtcctgtctaaagtaacatgatgat |
44006310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 44009519 - 44009605
Alignment:
| Q |
31 |
atttgtttggataagggaaatgctcattgatcatttggtagatggtgacactggtaatgtaatgccatgatgaacaagttggattcagca |
120 |
Q |
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| T |
44009519 |
atttgtttggataagggaaatgctcattgatcatttggtagatggtgacactcgtaatgtattgcc---ctgaacaagttggatttagca |
44009605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 44009759 - 44009852
Alignment:
| Q |
213 |
ttatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtt-tggacaaaatctatcaaaagaatgtaatcc |
305 |
Q |
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|||||||||| | ||||||| || |||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
44009759 |
ttatagtaatattaatatatacaatcttctcataggtagatggaacaaaaccaatgctgtgttgtggacaaaatctatcaaaagaatgtaatcc |
44009852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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