View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2842_low_2 (Length: 629)
Name: NF2842_low_2
Description: NF2842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2842_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 38324022 - 38324479
Alignment:
| Q |
17 |
tggttgtcgttggtttgaccggaatagtaaaatttaaaaaactttttgtaatcagttggtcattttatcggttgttaaaaactttaaattgattgttctg |
116 |
Q |
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| T |
38324022 |
tggttgtcgttggtttgaccggaatagtaaaatttaaaaaactttttgtaatcagttggtcattttatcggttgttaaaaactttaaattgattgttctg |
38324121 |
T |
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| Q |
117 |
tttattggaaacaagtgttgttgcttctatgtggttggaggttactgataaggcgggcaatggaatgtgtatccaatttggtaaagttttgattttttaa |
216 |
Q |
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| T |
38324122 |
tttattggaaacaagtgttgttgcttctctgtggttggaggttactgataaggcgggcaatggaatgtgtatccaatttggtaaagttttgattttttaa |
38324221 |
T |
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| Q |
217 |
gagaaaaggtgtattgctgttgcggagatcagaaacttgtgtagactggtatgtcttatgaaggacagaaatggacaccaaacacgaattttgagtgccc |
316 |
Q |
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| T |
38324222 |
gagaaaaggtgtattgctgttgcggagatcagaaacttgtgtagactgttatgtcttatgaaggacagaaatggacaccaaacacgaattttgagtgccc |
38324321 |
T |
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| Q |
317 |
aacattgttggacacgccttcagtttaaaatatcggtgttacaagtgttaagaagtgcactcaaatgcagccttggctcccctctgagagagggaaactt |
416 |
Q |
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| T |
38324322 |
aacattgttggacacaccttcagtttaaaatatcggtgttacaagtgtaaataagtgcactcaaatgcagccttggctcccctctgagagagggaaactt |
38324421 |
T |
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| Q |
417 |
tgcaggcatcagattaatcacacacttcttctgtatcaatgtaagtttctttgctgcc |
474 |
Q |
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| T |
38324422 |
tgcaggcatcagattaatcacacacttcttctgtatcaatgtaagtttctttgctgcc |
38324479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 535 - 612
Target Start/End: Original strand, 38325284 - 38325361
Alignment:
| Q |
535 |
gcaaattctaattggctaggtttaagaacaatgacggtaaccaatacaatatacttcaaagtaatcaatgactaaaac |
612 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38325284 |
gcaaattctaattggctaggtttaagaacaatgactgtaaccaatacaatatacttcaaagtaatcaatgactaaaac |
38325361 |
T |
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