View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2842_low_3 (Length: 508)
Name: NF2842_low_3
Description: NF2842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2842_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 38568832 - 38569312
Alignment:
| Q |
11 |
catcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgat |
110 |
Q |
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| T |
38568832 |
catcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgat |
38568931 |
T |
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| Q |
111 |
atgcaggtgttcggacacgacactccctgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtttta |
210 |
Q |
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| T |
38568932 |
atgcaggtgttcggacacgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtttta |
38569031 |
T |
|
| Q |
211 |
tgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggtaaa |
310 |
Q |
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| T |
38569032 |
tgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggtaaa |
38569131 |
T |
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| Q |
311 |
cccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtctctt |
410 |
Q |
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| T |
38569132 |
cccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtctctt |
38569231 |
T |
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| Q |
411 |
gtttttcttttgttatgtccttttcgccgtttgtagtagcatttgtacttgtttctgtacgattattctctgacgttgttg |
491 |
Q |
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| T |
38569232 |
gtttttcttttgttatgtccttttcgccgtttgtagtagcatttgtacttgtttctgtacgattattctctgacgttgttg |
38569312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 207 - 491
Target Start/End: Original strand, 38527615 - 38527902
Alignment:
| Q |
207 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgatagg |
306 |
Q |
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|||||| |||||||| |||||| || |||| || ||||||| ||||||||||||| ||||||| |||||||||||||| | | |||||| | ||| |
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| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagagg |
38527714 |
T |
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| Q |
307 |
taaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtc |
406 |
Q |
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| T |
38527715 |
taaacccaaaccgtttccaatagcaccgatagtaccaacaatcattaataaaatgtcagtagaatctgcaaaagtgaatagtttgtgaaatggaactgtc |
38527814 |
T |
|
| Q |
407 |
tcttgtttttcttttgttatgtccttttcgccgtttgtagtagcatttg---tacttgtttctgtacgattattctctgacgttgttg |
491 |
Q |
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| T |
38527815 |
tcttgtttttcttttgttttgtccttttcgccgtttgtaacaacatttgtactacttgtttctgttgaatttttctctgacgttgttg |
38527902 |
T |
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