View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2842_low_4 (Length: 414)

Name: NF2842_low_4
Description: NF2842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2842_low_4
NF2842_low_4
[»] chr4 (30 HSPs)
chr4 (12-410)||(29437647-29438050)
chr4 (207-410)||(19602200-19602404)
chr4 (234-379)||(26160265-26160410)
chr4 (234-410)||(33519483-33519659)
chr4 (236-401)||(4733157-4733322)
chr4 (234-326)||(31859452-31859546)
chr4 (316-409)||(10576993-10577085)
chr4 (213-410)||(13066160-13066360)
chr4 (312-409)||(15192762-15192854)
chr4 (39-130)||(31859711-31859802)
chr4 (234-330)||(22120115-22120212)
chr4 (187-406)||(7023718-7023937)
chr4 (179-284)||(10576867-10576974)
chr4 (309-409)||(18444733-18444832)
chr4 (234-373)||(23354039-23354178)
chr4 (358-401)||(1695399-1695442)
chr4 (39-130)||(20985203-20985294)
chr4 (34-125)||(33519238-33519329)
chr4 (40-110)||(23353832-23353902)
chr4 (234-301)||(12028484-12028552)
chr4 (361-409)||(47024239-47024287)
chr4 (310-409)||(5676720-5676818)
chr4 (356-409)||(25314730-25314783)
chr4 (312-401)||(26188283-26188370)
chr4 (39-91)||(17187386-17187438)
chr4 (366-409)||(12806445-12806488)
chr4 (259-409)||(39134276-39134426)
chr4 (234-343)||(21077722-21077831)
chr4 (365-409)||(18898572-18898616)
chr4 (39-99)||(21077446-21077506)
[»] chr7 (34 HSPs)
chr7 (151-410)||(24596482-24596742)
chr7 (208-410)||(9552570-9552774)
chr7 (208-411)||(9800966-9801171)
chr7 (208-410)||(9760524-9760728)
chr7 (234-409)||(5636657-5636833)
chr7 (194-341)||(4829239-4829387)
chr7 (187-410)||(5312265-5312500)
chr7 (150-265)||(8606224-8606338)
chr7 (234-390)||(22334791-22334948)
chr7 (163-343)||(30405952-30406134)
chr7 (40-143)||(3487164-3487266)
chr7 (244-401)||(4091983-4092140)
chr7 (39-130)||(24596815-24596905)
chr7 (358-409)||(7777580-7777631)
chr7 (304-401)||(20017506-20017600)
chr7 (354-408)||(21545344-21545398)
chr7 (356-399)||(18468220-18468263)
chr7 (361-407)||(9071002-9071048)
chr7 (303-409)||(17880430-17880535)
chr7 (261-409)||(18466987-18467135)
chr7 (365-409)||(23126705-23126749)
chr7 (366-397)||(7493862-7493893)
chr7 (234-292)||(3268533-3268591)
chr7 (365-407)||(3400410-3400452)
chr7 (361-399)||(7815886-7815924)
chr7 (39-77)||(20017166-20017204)
chr7 (361-399)||(21472359-21472397)
chr7 (293-359)||(21537083-21537149)
chr7 (39-77)||(29544733-29544771)
chr7 (39-80)||(4829001-4829042)
chr7 (39-76)||(7815536-7815573)
chr7 (309-409)||(11082067-11082168)
chr7 (366-407)||(20470266-20470307)
chr7 (377-409)||(20446807-20446839)
[»] chr3 (30 HSPs)
chr3 (182-409)||(26298177-26298405)
chr3 (192-410)||(18474610-18474831)
chr3 (207-392)||(19542596-19542783)
chr3 (176-406)||(20892054-20892287)
chr3 (213-407)||(11475287-11475481)
chr3 (240-410)||(21828686-21828858)
chr3 (234-409)||(10342207-10342383)
chr3 (246-360)||(22489614-22489729)
chr3 (234-374)||(22992206-22992347)
chr3 (234-359)||(19285549-19285673)
chr3 (347-410)||(14280776-14280839)
chr3 (351-410)||(22488355-22488414)
chr3 (234-344)||(33578208-33578318)
chr3 (185-344)||(26387355-26387517)
chr3 (334-410)||(8401891-8401967)
chr3 (39-91)||(19542973-19543025)
chr3 (63-154)||(26297978-26298069)
chr3 (234-406)||(19218684-19218856)
chr3 (42-115)||(27374274-27374347)
chr3 (348-409)||(28731152-28731212)
chr3 (361-409)||(13911871-13911919)
chr3 (39-79)||(18474383-18474423)
chr3 (333-409)||(26419300-26419376)
chr3 (178-224)||(22493445-22493491)
chr3 (234-292)||(22991074-22991132)
chr3 (39-77)||(25883316-25883354)
chr3 (363-401)||(27415699-27415737)
chr3 (364-409)||(2729079-2729124)
chr3 (39-99)||(8402392-8402452)
chr3 (39-83)||(19219068-19219112)
[»] chr2 (27 HSPs)
chr2 (41-410)||(14921575-14921938)
chr2 (195-407)||(25460338-25460545)
chr2 (220-406)||(24188450-24188632)
chr2 (234-408)||(18819131-18819305)
chr2 (236-409)||(17884052-17884224)
chr2 (208-359)||(27917560-27917712)
chr2 (234-401)||(18235807-18235987)
chr2 (39-157)||(34063625-34063742)
chr2 (234-409)||(21844312-21844485)
chr2 (244-320)||(39732119-39732196)
chr2 (234-409)||(21842683-21842858)
chr2 (234-344)||(24047785-24047895)
chr2 (340-409)||(9504471-9504541)
chr2 (340-409)||(9515837-9515907)
chr2 (236-332)||(17862842-17862938)
chr2 (34-158)||(18818910-18819033)
chr2 (236-319)||(31262413-31262497)
chr2 (361-409)||(30999348-30999396)
chr2 (39-146)||(17414958-17415065)
chr2 (363-410)||(31274414-31274461)
chr2 (234-327)||(15454070-15454163)
chr2 (327-409)||(20518747-20518829)
chr2 (347-400)||(27416757-27416810)
chr2 (363-410)||(25474585-25474632)
chr2 (39-77)||(16593614-16593652)
chr2 (262-330)||(21848035-21848104)
chr2 (43-80)||(27417123-27417160)
[»] chr1 (30 HSPs)
chr1 (191-410)||(21549058-21549277)
chr1 (191-410)||(52270708-52270935)
chr1 (195-407)||(25778148-25778361)
chr1 (190-409)||(23506183-23506403)
chr1 (207-388)||(25665296-25665480)
chr1 (39-159)||(26854102-26854221)
chr1 (182-344)||(26853873-26854036)
chr1 (243-401)||(25730937-25731096)
chr1 (234-409)||(34533082-34533257)
chr1 (313-409)||(50047619-50047714)
chr1 (241-398)||(31314004-31314161)
chr1 (234-330)||(27460443-27460540)
chr1 (40-120)||(25665590-25665670)
chr1 (187-409)||(15298359-15298580)
chr1 (39-110)||(23505969-23506040)
chr1 (233-410)||(14744932-14745102)
chr1 (348-409)||(30675992-30676053)
chr1 (291-401)||(26658002-26658107)
chr1 (293-409)||(23223890-23224003)
chr1 (340-408)||(11769490-11769558)
chr1 (39-159)||(52271027-52271146)
chr1 (347-409)||(11984708-11984770)
chr1 (39-151)||(21548861-21548974)
chr1 (234-330)||(25126900-25126997)
chr1 (358-406)||(12810735-12810783)
chr1 (361-409)||(23519224-23519272)
chr1 (39-77)||(11769857-11769895)
chr1 (364-401)||(9328579-9328616)
chr1 (364-401)||(9353542-9353579)
chr1 (34-91)||(19257655-19257712)
[»] chr8 (31 HSPs)
chr8 (185-409)||(11437801-11438026)
chr8 (191-410)||(18771340-18771560)
chr8 (217-401)||(30850549-30850731)
chr8 (225-408)||(30544171-30544358)
chr8 (187-408)||(24927344-24927565)
chr8 (39-159)||(11437633-11437753)
chr8 (293-409)||(13583100-13583216)
chr8 (225-344)||(18786125-18786245)
chr8 (310-398)||(14184463-14184553)
chr8 (40-159)||(30543976-30544095)
chr8 (294-408)||(29292366-29292479)
chr8 (236-409)||(23876395-23876571)
chr8 (238-407)||(28074945-28075115)
chr8 (234-410)||(6887691-6887867)
chr8 (236-408)||(12774352-12774525)
chr8 (39-131)||(5153971-5154063)
chr8 (39-152)||(13583304-13583421)
chr8 (312-399)||(22892738-22892821)
chr8 (350-409)||(12957076-12957135)
chr8 (363-410)||(28260027-28260074)
chr8 (367-410)||(28900810-28900853)
chr8 (234-330)||(5569737-5569833)
chr8 (361-410)||(13304978-13305027)
chr8 (39-80)||(22894392-22894433)
chr8 (297-401)||(23893615-23893716)
chr8 (234-389)||(24120711-24120866)
chr8 (45-96)||(30850944-30850995)
chr8 (40-123)||(32239502-32239585)
chr8 (187-302)||(14184326-14184443)
chr8 (366-409)||(16051786-16051830)
chr8 (39-99)||(31436683-31436742)
[»] scaffold0065 (2 HSPs)
scaffold0065 (193-410)||(12682-12907)
scaffold0065 (39-120)||(12457-12538)
[»] chr5 (35 HSPs)
chr5 (225-394)||(18281714-18281884)
chr5 (173-345)||(23157337-23157510)
chr5 (235-401)||(16622134-16622300)
chr5 (162-284)||(25368017-25368140)
chr5 (234-411)||(7742371-7742548)
chr5 (217-410)||(18178575-18178766)
chr5 (215-408)||(20083929-20084122)
chr5 (241-409)||(20695088-20695256)
chr5 (246-393)||(19763395-19763542)
chr5 (309-409)||(22930492-22930591)
chr5 (40-159)||(23157585-23157704)
chr5 (303-409)||(25594141-25594246)
chr5 (297-409)||(26329543-26329651)
chr5 (39-130)||(19331723-19331814)
chr5 (234-332)||(25681049-25681148)
chr5 (245-409)||(31340839-31341001)
chr5 (212-401)||(30791045-30791232)
chr5 (39-85)||(18872907-18872953)
chr5 (234-409)||(17694937-17695115)
chr5 (361-409)||(12265092-12265140)
chr5 (334-409)||(22643430-22643508)
chr5 (361-409)||(24268670-24268718)
chr5 (361-409)||(24345300-24345348)
chr5 (347-409)||(17381492-17381554)
chr5 (364-401)||(18451729-18451766)
chr5 (39-110)||(19763716-19763787)
chr5 (370-409)||(30072703-30072742)
chr5 (151-273)||(24410546-24410665)
chr5 (361-407)||(24842262-24842308)
chr5 (356-409)||(22230318-22230371)
chr5 (260-320)||(24846613-24846674)
chr5 (40-77)||(26329933-26329970)
chr5 (365-409)||(17028848-17028892)
chr5 (361-401)||(20715159-20715199)
chr5 (40-76)||(30072330-30072366)
[»] scaffold0337 (2 HSPs)
scaffold0337 (216-410)||(3573-3774)
scaffold0337 (39-120)||(2021-2102)
[»] chr6 (27 HSPs)
chr6 (238-409)||(22262835-22263006)
chr6 (248-410)||(16528117-16528279)
chr6 (234-344)||(9396154-9396264)
chr6 (261-409)||(13830391-13830542)
chr6 (293-401)||(26499350-26499457)
chr6 (150-315)||(28178365-28178531)
chr6 (255-326)||(10976638-10976710)
chr6 (311-400)||(15382214-15382305)
chr6 (216-323)||(17198379-17198487)
chr6 (234-401)||(32929966-32930133)
chr6 (363-405)||(30235860-30235902)
chr6 (187-292)||(15318459-15318564)
chr6 (237-292)||(12971956-12972011)
chr6 (311-401)||(15318596-15318686)
chr6 (311-409)||(15375965-15376063)
chr6 (39-133)||(26499655-26499748)
chr6 (39-120)||(24507263-24507344)
chr6 (325-401)||(15349259-15349335)
chr6 (43-110)||(17198652-17198719)
chr6 (187-277)||(15349108-15349198)
chr6 (218-292)||(15369135-15369209)
chr6 (39-77)||(15575137-15575175)
chr6 (369-410)||(9725671-9725712)
chr6 (216-279)||(15375857-15375920)
chr6 (361-401)||(17859976-17860016)
chr6 (41-77)||(17860312-17860348)
chr6 (367-407)||(19670103-19670143)
[»] scaffold0190 (2 HSPs)
scaffold0190 (208-404)||(11159-11355)
scaffold0190 (39-91)||(11548-11599)
[»] scaffold0386 (2 HSPs)
scaffold0386 (234-401)||(8226-8393)
scaffold0386 (234-401)||(11256-11423)
[»] scaffold0011 (3 HSPs)
scaffold0011 (39-158)||(227969-228088)
scaffold0011 (150-237)||(227818-227905)
scaffold0011 (348-401)||(227694-227747)
[»] scaffold0650 (1 HSPs)
scaffold0650 (312-409)||(5223-5316)
[»] scaffold1149 (2 HSPs)
scaffold1149 (39-119)||(2000-2080)
scaffold1149 (224-281)||(2246-2301)
[»] scaffold0185 (1 HSPs)
scaffold0185 (39-130)||(2713-2804)
[»] scaffold0362 (1 HSPs)
scaffold0362 (361-398)||(8236-8273)
[»] scaffold0100 (1 HSPs)
scaffold0100 (365-406)||(37568-37609)
[»] scaffold0186 (1 HSPs)
scaffold0186 (366-410)||(33231-33275)
[»] scaffold0836 (1 HSPs)
scaffold0836 (42-104)||(2824-2886)
[»] scaffold0043 (1 HSPs)
scaffold0043 (39-115)||(58963-59038)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 410
Target Start/End: Original strand, 29437647 - 29438050
Alignment:
Q  12 atgaagattgaagttcaatagttcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaat 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  29437647 atgaagattgaagttcaatggttcttagaagacaatacaaagtgaagaaacttcatttgaagttccaaggcatcgcaagacagaagaacgcttgaaaaat 29437746  T
Q  112 ggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgcgccccacgcatggac----acagggaggaagtgatgtttgcttgttttccaagccgt 207  Q
    |||| ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||    || |||||||||||| ||||||||||||||||||||||    
T  29437747 ggtcaaaaactgtagaatttgtgcaggaggggatgcctcatgcgccccacgcatggacacggacggggaggaagtgacgtttgcttgttttccaagccgt 29437846  T
Q  208 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29437847 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattcattcagaaaactag 29437946  T
Q  307 tggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatga 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  29437947 tggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttatctctagggtatgtttttctattgttttgtaatga 29438046  T
Q  407 tgtc 410  Q
    ||||    
T  29438047 tgtc 29438050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 207 - 410
Target Start/End: Original strand, 19602200 - 19602404
Alignment:
Q  207 tttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaacta 305  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |||||||| | || ||||||||| |||    
T  19602200 tttttggtggaaaacccctattttcactctcttaaccccgaagtaatcatgcattataaatagagacccttgtacactctttttttcattcagaaagcta 19602299  T
Q  306 gtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatg 405  Q
    | ||||||||||||||| ||||||| | |||||||||||  |||||| || ||||| || ||||| |||| ||||||||||||||||||||||||| |||    
T  19602300 gcggtacaaggcaagggccaagcatcaggagcttcaaggcagaggatttctatcatccttttgttatctcgagggtatgtttttctattgttttgtaatg 19602399  T
Q  406 atgtc 410  Q
    |||||    
T  19602400 atgtc 19602404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 379
Target Start/End: Original strand, 26160265 - 26160410
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||| || |||| ||    
T  26160265 tctcttaacccataagtaattatgccctataaatagagactcttgcacactcttttattcattcagaaagctagcggtacaagacaaggatctagca-ta 26160363  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagg 379  Q
    |||||||||||   || ||||| |||| | |||||||||||||||||    
T  26160364 agagcttcaagtcagatgatctacatcctcctcttgttctctctagg 26160410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 234 - 410
Target Start/End: Original strand, 33519483 - 33519659
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||| |||||||||| |||| ||  |||||||||| |||| ||||||||||||| |||| ||||||||| ||||  ||| |||||||||||||| || |     
T  33519483 tctcgtaacccctaattaatgatatactataaataaagacccttgcacactcttttattcattcagaaatctagcagtataaggcaagggtcaaaca-tc 33519581  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    ||||||||||||   | ||| || ||||| || ||||||||||| |||||| |||||||||||| || | ||||||||    
T  33519582 agagcttcaaggcaaaagatatctatcatccttttgttctctcttgggtatatttttctattgtcttataatgatgtc 33519659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 401
Target Start/End: Original strand, 4733157 - 4733322
Alignment:
Q  236 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaag 334  Q
    ||||||| ||||| |||| ||| |||||||||||| || |||| ||||| || |||| | ||||||| ||| | ||||||| |||||||||| | ||| |    
T  4733157 tcttaacacctaaataatgatgtactataaatagaaacccttggacactgttttattcaatcagaaagctactagtacaagacaagggtcaaacgtta-g 4733255  T
Q  335 agcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    ||||||||||  || |||||||||| |  | ||||||| |||| |||||||||||||||||||||||    
T  4733256 agcttcaaggcagatgatctccatcctcttgttgttctttctaaggtatgtttttctattgttttgt 4733322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 31859546 - 31859452
Alignment:
Q  234 tctcttaacccctaagtaatcatgcac-tataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaa 326  Q
    |||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||| |||| ||||||||||||||  |||||||||| |||||||    
T  31859546 tctcttaacccctaagtaatgatgcacttataagtagagacccttgcacactcttttattcattcagaaaactagatgtacaaggcaggggtcaa 31859452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 10576993 - 10577085
Alignment:
Q  316 gcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||||| | |||||| ||||| |||||||||| || | ||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  10576993 gcaagggtcaagcatca-gagcttgaaggaagaggatctccctcctcctcttgtcctctctagggtatgtttttatattgttttgtaatgatgt 10577085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 213 - 410
Target Start/End: Original strand, 13066160 - 13066360
Alignment:
Q  213 gtggaaaaaccctattttcactctcttaacc-cctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggt 310  Q
    |||||||||| |||||||  |||||||| || || ||||||||||  |||||||||||||||||||||  ||| || |||| |||||||||  ||| |||    
T  13066160 gtggaaaaactctattttacctctcttacccgccaaagtaatcataaactataaatagagactcttgcgtactattttattcattcagaaagttagcggt 13066259  T
Q  311 acaaggcaagggtcaagcattaag-agcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    | |||||||| |||||  || ||| | ||||||||   |||||||||||| |  | ||||||| ||||||||||||||||||| | ||||||  ||||||    
T  13066260 ataaggcaagagtcaaatatcaaggatcttcaaggcataggatctccatcctcgttttgttctttctagggtatgtttttctaatattttgtattgatgt 13066359  T
Q  410 c 410  Q
    |    
T  13066360 c 13066360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 409
Target Start/End: Original strand, 15192762 - 15192854
Alignment:
Q  312 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||||||||||| ||||||||||||  |||||   | || ||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  15192762 caaggcaagggtcaagcatta-gagcttcaagga--aggatt--cttcgttctcttgttctctccagggtgtgtttttctattgttttgttatgatgt 15192854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 31859802 - 31859711
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 130  Q
    ||||||||||||||||||||||| || |||| |||||||||| |||  |||||  ||||||||| ||||||| || ||||||||||| ||||    
T  31859802 gaagacaatacaaagtgaagaaaatttatttcaagttccaaggcatttcaagacggaagaacgcgtgaaaaaaggacgaaaactgcaaaatt 31859711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 22120115 - 22120212
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 330  Q
    |||||||||||||||||||| ||| ||   |||||||||| ||||||||| | | |||| |||||||| |||||  ||||||||||||||||||||||    
T  22120115 tctcttaacccctaagtaatgatgtacccaaaatagagacccttgcacacacatttattcattcagaatactagctgtacaaggcaagggtcaagcat 22120212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 406
Target Start/End: Complemental strand, 7023937 - 7023718
Alignment:
Q  187 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 286  Q
    ||||||||||||||||||  ||||| |||||||| ||  | ||||| ||||| |||||||| | | | |||||||| ||||||||||  |||||||| ||    
T  7023937 tttgcttgttttccaagctatttttagtggaaaatcctaaatttca-tctctaaacccctatgcagtgatgcactaaaaatagagaccattgcacacgct 7023839  T
Q  287 tgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgt 385  Q
    | |||| ||| |||||  |||   ||||||| |||||||||| |  | |||||||| ||  || |||||||||| | || | ||| ||||||| ||||||    
T  7023838 tttattcattgagaaagttagcaatacaaggaaagggtcaagtaccaggagcttcatggcagatgatctccatcctcctttcgttttctctagtgtatgt 7023739  T
Q  386 ttttctattgttttgtgatga 406  Q
    |||| | ||||||||| ||||    
T  7023738 ttttatgttgttttgtaatga 7023718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 10576867 - 10576974
Alignment:
Q  179 aagtgatgtttgcttgttttccaagccgtttt--tggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactct 276  Q
    ||||| |||||||||||||||||||| | |||  ||| || |||| || |||||   ||||||||||| |||||| | ||||||||||||||||||| ||    
T  10576867 aagtgttgtttgcttgttttccaagctgatttggtggggggaaaatcccatttttcttctcttaacccgtaagtatttatgcactataaatagagaccct 10576966  T
Q  277 tgcacact 284  Q
    ||||||||    
T  10576967 tgcacact 10576974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 18444733 - 18444832
Alignment:
Q  309 gtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
    |||||||| |||||||||| || | ||| |||||||  ||||||||||||| | |||||||||||  |||||||||||||| | ||||||||| ||||||    
T  18444733 gtacaaggaaagggtcaagaatca-gagtttcaaggcggaggatctccatcctcctcttgttctcattagggtatgtttttatgttgttttgtaatgatg 18444831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 23354039 - 23354178
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||||||||||||||| ||| | |||||||| ||||||| ||| |||||| |||| ||||||||| | |   ||||||||||| |||||| || |     
T  23354039 tctcttaacccctaagtaatgatgtattataaataaagactctcgcaaactcttttattcattcagaaagccaacagtacaaggcaaaggtcaaaca-tc 23354137  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctc 373  Q
    |||||||||| |  ||||||||||||| |  ||||||||||    
T  23354138 agagcttcaaagcagaggatctccatcctcatcttgttctc 23354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 1695442 - 1695399
Alignment:
Q  358 tcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  1695442 tcattctcttgttctctcgagggtatgtttttctattgttttgt 1695399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 20985294 - 20985203
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 130  Q
    |||||||||||||||||||||||  ||||||||| || |||||||  ||| ||  ||| ||||||||||||  ||||||||| |||||||||    
T  20985294 gaagacaatacaaagtgaagaaaactcatttgaaatttcaagacaatgcatgacggaaaaacgcttgaaaatgggtcgaaaattgcagaatt 20985203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 33519238 - 33519329
Alignment:
Q  34 tcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgca 125  Q
    |||| |||||||||||||  |||||||| ||||||| || ||||||| |||  | ||| ||||||||||||||||||||| |||||| ||||    
T  33519238 tctttgaagacaatacaagttgaagaaaattcatttcaaattccaaggcatttccagacagaagaacgcttgaaaaatggacgaaaattgca 33519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 23353832 - 23353902
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 110  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||| |||| | |||| |||||| ||||||    
T  23353832 aagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaaaacagaaaaacgctcgaaaaa 23353902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 12028552 - 12028484
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaa 301  Q
    ||||||||| |  ||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  12028552 tctcttaactcacaagtaaagatgcactataaatagagactcttgcacactcttttattcattcagaaa 12028484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 47024287 - 47024239
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  47024287 ttctcttgttctctctaaggtatatttttctattgttttgttatgatgt 47024239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 409
Target Start/End: Original strand, 5676720 - 5676818
Alignment:
Q  310 tacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||| ||||||| | ||| |||||||  ||  || | |||| | |||||||||| |||| ||||||||||||||||||||||| |||||||    
T  5676720 tacaaggcaagggccaagcatca-gagtttcaaggtagataattttcatcctcctcttgttctttctatggtatgtttttctattgttttgtaatgatgt 5676818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 25314783 - 25314730
Alignment:
Q  356 catcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||| | ||||||| |||||||||||||||||||||||||| | |||||||    
T  25314783 catcattttattgttctgtctagggtatgtttttctattgttttcttatgatgt 25314730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 26188283 - 26188370
Alignment:
Q  312 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    ||||||||| ||||||||| | ||| | |||||  |||||||| |||| | |||||||||||| ||||||||| ||||||||||||||||    
T  26188283 caaggcaagagtcaagcatca-gagttccaaggcagaggatcttcatcctcctcttgttctctatagggtatg-ttttctattgttttgt 26188370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 17187386 - 17187438
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 91  Q
    |||||||||||||||| |||||| ||||||| ||||| |||||||| ||||||    
T  17187386 gaagacaatacaaagtaaagaaaattcatttcaagtttcaagacattgcaaga 17187438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 12806488 - 12806445
Alignment:
Q  366 ttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||    
T  12806488 ttgttctctctaggatatatttttctattgttttgttatgatgt 12806445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 409
Target Start/End: Complemental strand, 39134426 - 39134276
Alignment:
Q  259 actataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctcca 357  Q
    |||||||||| ||||| |||||| | ||| |||| ||||||||| |||  |||| ||| ||| ||||||  |||| ||| |  ||||| ||||||||| |    
T  39134426 actataaatatagacttttgcacgcacttttatttattcagaaagctaacggtagaagacaaaggtcaattatta-gagttgtaaggaagaggatctcta 39134328  T
Q  358 tcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    || | || ||||||||| ||  |||||||||||||||||||| | |||||||    
T  39134327 tcctcctattgttctctataatgtatgtttttctattgttttataatgatgt 39134276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 21077722 - 21077831
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||  |||| |  |||| ||||| ||| |||| | ||||||| ||||||||| || |     
T  21077722 tctcttaacccctaagtaatgatctactataaatagagacccttgtccactatcttattcattcaaaaagctagcgatacaaggtaagggtcaatca-tc 21077820  T
Q  333 agagcttcaag 343  Q
    |||||||||||    
T  21077821 agagcttcaag 21077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 18898572 - 18898616
Alignment:
Q  365 cttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||| |||||| | ||||||||||||||||||||| |||||||    
T  18898572 cttgttttctctaagttatgtttttctattgttttgttatgatgt 18898616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 21077446 - 21077506
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaa 99  Q
    |||||||||||||| |||| ||| ||||||| |||||||||| ||| | ||||| ||||||    
T  21077446 gaagacaatacaaattgaataaaattcatttcaagttccaaggcattgaaagatggaagaa 21077506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 151 - 410
Target Start/End: Complemental strand, 24596742 - 24596482
Alignment:
Q  151 atgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagt 250  Q
    ||||||||  |||||||||||||  |  ||||| ||||||||||||||||||||| ||||||||||||||  |||||||||||| ||||||||| ||  |    
T  24596742 atgcgccctgcgcatggacacagacattaagtgttgtttgcttgttttccaagccatttttggtggaaaactcctattttcactatcttaacccgtatat 24596643  T
Q  251 aatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgag 349  Q
    ||||||||| |||||||||||||  |||||||||||| |||| ||||||||| ||  |||||||||||||||||||||||| | |||||||||||  ||     
T  24596642 aatcatgcattataaatagagaccattgcacactcttttattcattcagaaagctgatggtacaaggcaagggtcaagcatcaggagcttcaaggcagat 24596543  T
Q  350 gatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||||| ||||| |||||||||||||||| |||||||||| ||||||||| | ||||||||    
T  24596542 gatctctatcatcctcttgttctctctagtgtatgtttttatattgttttataatgatgtc 24596482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 208 - 410
Target Start/End: Original strand, 9552570 - 9552774
Alignment:
Q  208 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 306  Q
    |||||||| |||||||||||||||||||||| |||||||||| || | || |||| ||||||||||  |||||||| |||  | | |||||||||||||     
T  9552570 ttttggtgtaaaaaccctattttcactctctcaacccctaagaaaccttgaactacaaatagagaccgttgcacacactttaactcattcagaaaactaa 9552669  T
Q  307 tggta-caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatg 405  Q
     |||  ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  9552670 cggtggcaaggcaagggtcaagcatcaagagcttcaaggaagaggatctccatcatcctcttgttctctctagggtatatttttctattattttgtgatg 9552769  T
Q  406 atgtc 410  Q
    |||||    
T  9552770 atgtc 9552774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 208 - 411
Target Start/End: Original strand, 9800966 - 9801171
Alignment:
Q  208 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 306  Q
    ||||||||||||| |||||||||||||||||||||||||||| || | || |||||||||||||||  ||||| || |||  | | ||||| ||||||||    
T  9800966 ttttggtggaaaacccctattttcactctcttaacccctaagaaaccttgaactataaatagagaccgttgcatacactttaactcattcaaaaaactag 9801065  T
Q  307 tggta-caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatg 405  Q
     |||  ||||||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||||||||||||| |||||||| ||| |||||| |||    
T  9801066 cggtggcaaggcaagggtcaagcatcaagagctttaaggaagaggatctccatcctcctcttgttctctctagggtgtgtttttcaattattttgtaatg 9801165  T
Q  406 atgtcc 411  Q
    ||||||    
T  9801166 atgtcc 9801171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 208 - 410
Target Start/End: Original strand, 9760524 - 9760728
Alignment:
Q  208 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 306  Q
    ||||||||||||| |||||||||||||||||||||||||||| || | || |||||||||||||||  ||||| || |||  | | ||||| ||||||||    
T  9760524 ttttggtggaaaacccctattttcactctcttaacccctaagaaaccttgaactataaatagagaccgttgcatacactttaactcattcaaaaaactag 9760623  T
Q  307 tggta-caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatg 405  Q
     |||  |||| |||||||||| ||| |||||||||||||| ||||||||||||| | || |||||||||||| |||||||||||||||| |||||| |||    
T  9760624 gggtggcaagacaagggtcaaccatcaagagcttcaaggaagaggatctccatcctcctattgttctctctaaggtatgtttttctattattttgtaatg 9760723  T
Q  406 atgtc 410  Q
    |||||    
T  9760724 atgtc 9760728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 5636657 - 5636833
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||||||||| ||| |||| ||||||||| ||||| ||||||||||| |||||||||| |    
T  5636657 tctcttaatcactaagtaatgatgcactataaatagagacccttgcacacacttttattcattcagaaagctagtagtacaaggcaatggtcaagcatca 5636756  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttc-tattgttttgtgatgatgt 409  Q
    | ||||||||||  || |||||||| | | ||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  5636757 a-agcttcaaggcagatgatctccaacctcctcttgttctctctagggtatttttttcttattgttttgtaatgatgt 5636833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 194 - 341
Target Start/End: Original strand, 4829239 - 4829387
Alignment:
Q  194 gttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt- 292  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| | || ||||     
T  4829239 gttttccaagttgtttttggtggaaaaactctattttcactctcttaacccctaagtagtcatccactatgaatagagactcatgcacattattttattc 4829338  T
Q  293 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttca 341  Q
    ||| ||||| |||| ||||||||||||||||||||||| |||| |||||    
T  4829339 atttagaaagctagcggtacaaggcaagggtcaagcatcaagatcttca 4829387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 187 - 410
Target Start/End: Complemental strand, 5312500 - 5312265
Alignment:
Q  187 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 286  Q
    |||||||||||||||||  |||||| |||||||| ||  |||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||  |    
T  5312500 tttgcttgttttccaagttgtttttagtggaaaacccaaattttcac-ctcttaacccctaagtaatgatgtactataaacagagactcttgcacacatt 5312402  T
Q  287 tgtatt-------------attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctc 373  Q
    | ||||             ||| ||||| |||||||||||||||||| ||||| ||| | ||| |||||||   | |||||||||| | |||||||||||    
T  5312401 tttattcattccgaaaagcattgagaaagctagtggtacaaggcaagagtcaaacataaggagtttcaaggtataagatctccatcctcctcttgttctc 5312302  T
Q  374 tctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  5312301 tctagggtatgtttttcaattgttttgtaatgatgtc 5312265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 8606224 - 8606338
Alignment:
Q  150 catgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaag 249  Q
    ||||||||| ||||||||||||| | ||||| || |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |    
T  8606224 catgcgccctacgcatggacacacgaaggaaatgttgtttgcttgttttccaaaccgtttttggtgg-aaaactctattttcactctcttaacccctatg 8606322  T
Q  250 taatcatgcactataa 265  Q
    || |||||||||||||    
T  8606323 tattcatgcactataa 8606338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 390
Target Start/End: Complemental strand, 22334948 - 22334791
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatta-ttcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||||||||||||||| |||||||||||||| |||   ||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||| |    
T  22334948 tctcttaacccctaagtaatgatgcactataaataaagatcattgaacactcttttattaattcagaaagctagtggtacaaggcaagggtcaagcatca 22334849  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttc 390  Q
    ||| |||  |||  ||||||||||||  | |||||| ||| |||| | ||||||||||    
T  22334848 agaactttcaggcagaggatctccattctcctcttggtctttctaagatatgtttttc 22334791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 30405952 - 30406134
Alignment:
Q  163 catggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaa-aaaccctattttcactctcttaacccctaagtaatcatgcact 261  Q
    ||||||||| || ||| |||| |||||||||||||||||||| |||||| ||| |  |||||||||||||||||||||||   ||| |||||||| ||||    
T  30405952 catggacacgggtagggagtgttgtttgcttgttttccaagctgttttttgtgaaggaaaccctattttcactctcttaattgctatgtaatcatacact 30406051  T
Q  262 ataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaag 343  Q
    ||||||||| || ||||||||  ||| |||| ||||| ||| |||| ||||||||| ||  ||||||||| | |||| |||||    
T  30406052 ataaatagaaacccttgcacaaacttttattcattcataaagctagcggtacaaggtaatagtcaagcatcaggagcatcaag 30406134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 3487266 - 3487164
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttg-aaaaatggtcgaaaactgcagaatttgcgcaag 138  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||  ||||||| |||| |||||||||| ||||||| |||||| | ||| |    
T  3487266 aagacaatacaaagtgaagaa--ttcatttgaagttccaagacattgcaagacggaagaactcttgaaaaaatggtcaaaaactgtagaattcgagcacg 3487169  T
Q  139 agggg 143  Q
    |||||    
T  3487168 agggg 3487164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 401
Target Start/End: Complemental strand, 4092140 - 4091983
Alignment:
Q  244 cctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttc-a 341  Q
    |||||||||||||    ||||||||||||| ||| |||||  |  |||| ||||||||| |||| |||  |||||||||||||||||| | ||| ||| |    
T  4092140 cctaagtaatcatatgttataaatagagaccctttcacacattattattcattcagaaagctagcggttgaaggcaagggtcaagcatca-gaggttcca 4092042  T
Q  342 aggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||  ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  4092041 aggcagaggatctccatcttcctcttgttctctcta-ggtatgtttttctattgttttgt 4091983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 24596905 - 24596815
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 130  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||   ||||| || || ||||||||||||||||||| ||||    
T  24596905 gaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgcaagacgaaagaatgcgtg-aaaatggtcgaaaactgcataatt 24596815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 7777631 - 7777580
Alignment:
Q  358 tcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  7777631 tcattctcttgttctctctagggtatgtttttctattgttttattatgatgt 7777580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 20017506 - 20017600
Alignment:
Q  304 tagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    ||||||| ||||||||||||||| |||||| || | |||||   ||||||| |||| | |||||||||||||| || |||||||||||||||||||||    
T  20017506 tagtggttcaaggcaagggtcaaacattaa-agttccaaggc--aggatcttcatcttcctcttgttctctcttggctatgtttttctattgttttgt 20017600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 21545398 - 21545344
Alignment:
Q  354 tccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  21545398 tccattatcctcttgttctctctagggtatgtttttatattgttttgttatgatg 21545344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 18468263 - 18468220
Alignment:
Q  356 catcattctcttgttctctctagggtatgtttttctattgtttt 399  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  18468263 catcattcttttgttctctttagggtatgtttttctattgtttt 18468220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 9071002 - 9071048
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgat 407  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  9071002 ttctcttcttctctctaaggtatgtttttctattgttttgttatgat 9071048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 409
Target Start/End: Complemental strand, 17880535 - 17880430
Alignment:
Q  303 ctagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtg 402  Q
    ||||||||| |||||||   |||||||||| |||||| || |  ||||||||||||| | || |||||||||||| ||||||||||  |||| ||||||     
T  17880535 ctagtggtataaggcaaatatcaagcatta-gagctttaatgtagaggatctccatcctcctattgttctctctatggtatgttttattattattttgta 17880437  T
Q  403 atgatgt 409  Q
    |||||||    
T  17880436 atgatgt 17880430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 409
Target Start/End: Original strand, 18466987 - 18467135
Alignment:
Q  261 tataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatc 359  Q
    |||||||||||||  ||||||||| || |||| ||| ||||| |||  |||||||| ||| ||||||| || |  ||||||||||  |||||| ||| ||    
T  18466987 tataaatagagacctttgcacactattttattcattgagaaagctaacggtacaagacaaaggtcaagaatcat-agcttcaaggtagaggatttccctc 18467085  T
Q  360 attctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
     | |||||| | || || |||||| ||||||||||||||||| |||||||    
T  18467086 ctcctcttgctttcactggggtatatttttctattgttttgtaatgatgt 18467135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 23126705 - 23126749
Alignment:
Q  365 cttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||    
T  23126705 cttgctctctctagggtttgtttttctattgttttgttatgatgt 23126749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 397
Target Start/End: Original strand, 7493862 - 7493893
Alignment:
Q  366 ttgttctctctagggtatgtttttctattgtt 397  Q
    ||||||||||||||||||||||||||||||||    
T  7493862 ttgttctctctagggtatgtttttctattgtt 7493893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 3268591 - 3268533
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 292  Q
    |||||||| ||||||||||| ||| |||||| ||| |||||||||||||| ||| ||||    
T  3268591 tctcttaaaccctaagtaatgatgtactatatatatagactcttgcacacacttttatt 3268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 3400410 - 3400452
Alignment:
Q  365 cttgttctctctagggtatgtttttctattgttttgtgatgat 407  Q
    |||||| |||||||||||||||||| ||||||||||| |||||    
T  3400410 cttgttttctctagggtatgtttttatattgttttgttatgat 3400452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 7815886 - 7815924
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgtttt 399  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  7815886 ttcttttgttcactctagggtatgtttttctattgtttt 7815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 20017166 - 20017204
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  20017166 gaagacaatacaaagtgaagaaaattcatttcaagttcc 20017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 21472359 - 21472397
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgtttt 399  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  21472359 ttcttttgttctctctaggatatgtttttctattgtttt 21472397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 21537149 - 21537083
Alignment:
Q  293 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatc 359  Q
    ||||| ||| |||| ||||||||| |||||| |||||| ||||||||||| |  |||||||||||||    
T  21537149 attcaaaaagctagcggtacaaggaaagggtaaagcatcaagagcttcaatggagaggatctccatc 21537083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 29544733 - 29544771
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  29544733 gaagacaatacaaagtgaagaaaattcatttcaagttcc 29544771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 4829001 - 4829042
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaag 80  Q
    ||||||||||||||||||||| | ||||||| ||||||||||    
T  4829001 gaagacaatacaaagtgaagataattcatttcaagttccaag 4829042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 7815536 - 7815573
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttc 76  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  7815536 gaagacaatacaaagtgaagaaaattcatttcaagttc 7815573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 11082067 - 11082168
Alignment:
Q  309 gtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatg-tttttctattgttttgtgatgat 407  Q
    |||||||| |||||||||||||||   ||| |||||  | |||||||||||  | |||||||||| |||  ||||| ||||||||||||||| | |||||    
T  11082067 gtacaaggaaagggtcaagcattagaggctgcaaggcaggggatctccatccatttcttgttctccctatagtatgttttttctattgttttttcatgat 11082166  T
Q  408 gt 409  Q
    ||    
T  11082167 gt 11082168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 20470307 - 20470266
Alignment:
Q  366 ttgttctctctagggtatgtttttctattgttttgtgatgat 407  Q
    ||||||||||||||||||| |||||| ||||||||| |||||    
T  20470307 ttgttctctctagggtatgcttttcttttgttttgttatgat 20470266  T

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Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 20446807 - 20446839
Alignment:
Q  377 agggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||||||||||||||| |||||||    
T  20446807 agggtatgtttttctattgttttgttatgatgt 20446839  T

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Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 182 - 409
Target Start/End: Original strand, 26298177 - 26298405
Alignment:
Q  182 tgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcac 281  Q
    |||||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  26298177 tgatgtttccttgttttccaagctgtttttggtgaaaaaaccttattttccctctcttaacccctaaggaatcatgcattataaatagagactcttgcac 26298276  T
Q  282 actcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctaggg 380  Q
    |||||| |||| ||| ||||| |||||| |||||| |||||||||||||| | |||||||||||| |||||||| |||| | |||||||| |||||   |    
T  26298277 actcttttattaattgagaaagctagtgctacaagtcaagggtcaagcatcatgagcttcaaggaagaggatcttcatcctcctcttgttgtctctcaag 26298376  T
Q  381 tatgtttttctattgttttgtgatgatgt 409  Q
    |||||| |||||||||||||| |||||||    
T  26298377 tatgttattctattgttttgtaatgatgt 26298405  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 192 - 410
Target Start/End: Original strand, 18474610 - 18474831
Alignment:
Q  192 ttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaa--cccctaagtaatcatgcactataaatagagactcttgcacactcttgt 289  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||||||  |||||| |||||||| || |||||||||||||   || ||||||||      
T  18474610 ttgttttccaaggcgttcttggtggaaaacccctattttcactctcttaatccccctacgtaatcatccattataaatagagacaaatgaacactctttc 18474709  T
Q  290 att-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 388  Q
    ||| |||| |||| |||| ||||||||||||||||||||||| | ||| |||||||  ||| ||||||||| | ||||| ||||||| ||||| | ||||    
T  18474710 attcattctgaaagctagaggtacaaggcaagggtcaagcatcaggagtttcaaggcagagtatctccatcctcctcttattctctccagggtttatttt 18474809  T
Q  389 tctattgttttgtgatgatgtc 410  Q
    ||||||| ||||| ||||||||    
T  18474810 tctattggtttgtaatgatgtc 18474831  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 392
Target Start/End: Complemental strand, 19542783 - 19542596
Alignment:
Q  207 tttttggtggaaaaaccctattttcactctcttaacccc-taagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaact 304  Q
    ||||||||||||||||||||||||||||||||||||||| ||  | |||||||| ||||||||||||| | || ||||||||  ||| |||| |||| ||    
T  19542783 tttttggtggaaaaaccctattttcactctcttaaccccgtatatgatcatgcattataaatagagacacatgaacactctttcattcattctgaaagct 19542684  T
Q  305 agtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 392  Q
     | |||||||||||||||||||||||||  || || ||||  ||| ||||||||| | ||||||||||||||||||||| ||||||||    
T  19542683 tgaggtacaaggcaagggtcaagcattataagttttaaggcagagtatctccatcctcctcttgttctctctagggtatatttttcta 19542596  T

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Target: chr3; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 176 - 406
Target Start/End: Original strand, 20892054 - 20892287
Alignment:
Q  176 aggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacc-cctaagtaatcatgcactataaatagagact 274  Q
    |||||||| ||||| |||| |||  ||||| ||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| || |    
T  20892054 aggaagtgttgttttcttgctttataagccattttttgtggaaaaaccctattttcactcccttaaccacctaagcaatcatgcactataaatagtgaat 20892153  T
Q  275 cttgcacactcttgt-attattcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacga-ggatctccatcattctcttgttct 372  Q
    |||||||||| || | | |||||| ||| |||| ||||||||||||||||||||||| ||| | || || ||| | |||| |||||| | ||||||||||    
T  20892154 cttgcacactattttaactattcataaagctagcggtacaaggcaagggtcaagcatcaagcgttttaa-gacaagggatttccatcctcctcttgttct 20892252  T
Q  373 ctcta-gggtatgtttttctattgttttgtgatga 406  Q
    || || |||||||||||||| || |||||| ||||    
T  20892253 ctttacgggtatgtttttcttttcttttgtaatga 20892287  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 213 - 407
Target Start/End: Original strand, 11475287 - 11475481
Alignment:
Q  213 gtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggta 311  Q
    |||| ||||||||| |||   ||| |||||||||||||||| ||| | ||||||||||||||||||||||||||| |||| ||||||||| |||| |||     
T  11475287 gtgggaaaaccctagttttcttcttttaacccctaagtaatgatgtaatataaatagagactcttgcacactcttttattcattcagaaagctagcggtg 11475386  T
Q  312 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgat 407  Q
    |||||||||| |||||||| || ||||||||||   |||||||  ||| ||  ||||||||||||| ||||||||||| ||||||||||| |||||    
T  11475387 caaggcaaggatcaagcatcaa-agcttcaaggtaaaggatctttatccttaccttgttctctctaaggtatgtttttatattgttttgtaatgat 11475481  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 410
Target Start/End: Complemental strand, 21828858 - 21828686
Alignment:
Q  240 aacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagct 338  Q
    |||||||||||||| ||| ||||||||||||||| |||| ||| || | |||| ||||||||| |||| || |||| ||||||||||||||| |||||||    
T  21828858 aacccctaagtaatgatgaactataaatagagacccttgtacattcatttattcattcagaaagctagcggcacaatgcaagggtcaagcat-aagagct 21828760  T
Q  339 tcaaggacgaggatctccatcattctcttgttctctctaggg--tatgtttttctattgttttgtgatgatgtc 410  Q
    ||||||   |||||||||||| | ||||||||||||||||||  | | |||||||||||||| || ||||||||    
T  21828759 tcaaggcaaaggatctccatcttcctcttgttctctctagggaatttttttttctattgtttggtaatgatgtc 21828686  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 10342207 - 10342383
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatta-ttcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| ||||||||||||||  |||||||||| |||||||||||||   |  ||||| ||||||||  ||||||| ||| || |||||||| ||| |    
T  10342207 tctcttaaaccctaagtaatcatttactataaatatagactcttgcacatattattattaattcagaaagttagtggttcaaagcgagggtcaaacatca 10342306  T
Q  333 agagctt-caaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
     ||| || |||||  || ||| |||||| | ||||||||||||||||||||| |||||||||| |||||| |||||||    
T  10342307 -gagttttcaaggcagatgatttccatcctcctcttgttctctctagggtatatttttctattattttgttatgatgt 10342383  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 22489729 - 22489614
Alignment:
Q  246 taagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagg 344  Q
    ||||||||||||||||||||||||||||  ||||||||| || |||| |||   ||| |||| |||||||| |||| ||||||||||| ||||||||| |    
T  22489729 taagtaatcatgcactataaatagagaccattgcacactattttattcattttaaaatctagcggtacaagacaagagtcaagcattacgagcttcaaag 22489630  T
Q  345 acgaggatctccatca 360  Q
      ||||||||||||||    
T  22489629 tagaggatctccatca 22489614  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 374
Target Start/End: Complemental strand, 22992347 - 22992206
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||| | || ||| |||||  |||  |||||||||| ||||||| |  |     
T  22992347 tctctaaacccctacgtaatgatgcactataaatagagactcttccacactcttttgttgatttagaaacgtagcagtacaaggcaggggtcaaaccatc 22992248  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctct 374  Q
    | ||||||||||  ||||||||| ||| | ||||||||||||    
T  22992247 atagcttcaaggtagaggatctctatcctcctcttgttctct 22992206  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 359
Target Start/End: Original strand, 19285549 - 19285673
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||| ||||||| ||||||| |||||||||||||| ||||  ||| |||||||| |||| ||||||||| ||| |||||||||||||||||||| || |     
T  19285549 tctcctaaccccgaagtaatgatgcactataaataaagacctttg-acactcttttattcattcagaaagctaatggtacaaggcaagggtcaaaca-tc 19285646  T
Q  333 agagcttcaaggacgaggatctccatc 359  Q
     |||||||||||  |||||||| ||||    
T  19285647 ggagcttcaaggcagaggatcttcatc 19285673  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 14280839 - 14280776
Alignment:
Q  347 gaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  14280839 gaggatctacatcctcctcttgttctctctagggtatgtttttctattgctttgtaatggtgtc 14280776  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 22488414 - 22488355
Alignment:
Q  351 atctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    ||||||||| | ||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  22488414 atctccatcctcctcttgttctctctaggatatgtttttcaattgttttgtaatgatgtc 22488355  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 344
Target Start/End: Original strand, 33578208 - 33578318
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    ||||||||||  || ||||| || |||||||||||||||| ||||||||| ||| |||| ||| ||||| |||| ||| |||||||| |||||| ||||     
T  33578208 tctcttaacctatacgtaatgatacactataaatagagacacttgcacacacttttattcatttagaaagctagcggttcaaggcaatggtcaaacatt- 33578306  T
Q  333 agagcttcaagg 344  Q
    ||||||||||||    
T  33578307 agagcttcaagg 33578318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 344
Target Start/End: Complemental strand, 26387517 - 26387355
Alignment:
Q  185 tgtttgcttgttttccaagccgtttttggtggaaaaaccctattt-tcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacac 283  Q
    |||||||| ||||||||| | |||||||||||||||| ||||||| |  | | ||||||||| ||||||| ||||| |||||||| | |  ||| | |||    
T  26387517 tgtttgctagttttccaaactgtttttggtggaaaaaacctatttctaccccccttaacccccaagtaatgatgcattataaatatatatccttactcac 26387418  T
Q  284 tcttgtatt-attcagaaaa-ctagtggtacaaggcaagggtcaagcattaagagcttcaagg 344  Q
    ||||  ||| |||||||||| ||| || |||| |||||||||| || || |||||||||||||    
T  26387417 tctttcattcattcagaaaagctactgatacatggcaagggtcgagaatcaagagcttcaagg 26387355  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 8401967 - 8401891
Alignment:
Q  334 gagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||||||| ||  |||||||| |||| | |||||||| |||||||||||||||||| ||||||||||| || |||||    
T  8401967 gagcttcatggcagaggatcttcatcctcctcttgttatctctagggtatgtttttatattgttttgtaataatgtc 8401891  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 19543025 - 19542973
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 91  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||    
T  19543025 gaagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaaga 19542973  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 26297978 - 26298069
Alignment:
Q  63 ttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgc 154  Q
    |||||||||||||||||| ||| ||||||||| ||||||| |||||||  ||  |||| || ||||||||| || |||||| || |||||||    
T  26297978 ttcatttgaagttccaaggcattgcaagataggagaacgcatgaaaaagagtaaaaaattgaagaatttgcacatgaggggttgtctcatgc 26298069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 406
Target Start/End: Complemental strand, 19218856 - 19218684
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| || |||||||||||   |||||||||||||| |||| ||||  |  |||| ||| | ||| |||  ||| |||| |||||||||||||| |    
T  19218856 tctcttaaaccttaagtaatcatattctataaatagagacccttgtacacattcttattcattaataaagctaacggttcaagacaagggtcaagcatca 19218757  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtat-gtttttctattgttttgtgatga 406  Q
     ||| |||||||  ||| ||||||||| | |||||||||||||||| ||||  ||||||||||||||||| ||||    
T  19218756 -gag-ttcaaggcagagtatctccatcctcctcttgttctctctagagtatcctttttctattgttttgttatga 19218684  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 27374347 - 27374274
Alignment:
Q  42 gacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtc 115  Q
    ||||||||| |||||||||| ||||||| ||| ||||||   || ||||| |||||||||||||||||| ||||    
T  27374347 gacaatacagagtgaagaaaattcatttaaagatccaaggtgtcacaagacagaagaacgcttgaaaaagggtc 27374274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 28731212 - 28731152
Alignment:
Q  348 aggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||| || ||||||||||||||   ||||||||||||||||||||| |||||||    
T  28731212 aggatctccatccttttcttgttctctctaaa-tatgtttttctattgttttgtaatgatgt 28731152  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 13911871 - 13911919
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| ||||||||| |||||||||||||||  |||||||    
T  13911871 ttctcttgttctctatagggtatggttttctattgttttgatatgatgt 13911919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 18474383 - 18474423
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaa 79  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  18474383 gaagacaatacaaagtgaagaaaattcatttcaagttccaa 18474423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 26419300 - 26419376
Alignment:
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||   ||||||| |||  | |||||||| ||  |||||||||||||||||||||||||| |||||||    
T  26419300 agagcttcaaggtaaaggatcttcattctcctcttgttttcattagggtatgtttttctattgttttgtaatgatgt 26419376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 22493491 - 22493445
Alignment:
Q  178 gaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccc 224  Q
    |||||||||||| ||||||||| || | |||||||||||||||||||    
T  22493491 gaagtgatgttttcttgttttcgaaactgtttttggtggaaaaaccc 22493445  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 22991132 - 22991074
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 292  Q
    |||| |||||| |||||||| ||||||||||||| |||||  |||||||||||| ||||    
T  22991132 tctcgtaacccataagtaatgatgcactataaatcgagaccattgcacactcttttatt 22991074  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 25883316 - 25883354
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  25883316 gaagacaatacaaagtgaagaaaattcatttcaagttcc 25883354  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 27415699 - 27415737
Alignment:
Q  363 ctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  27415699 ctcttgttctctctggggtatctttttctattgttttgt 27415737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 2729124 - 2729079
Alignment:
Q  364 tcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||    
T  2729124 tcttgttctctctatggtatatttttctactgttttgttatgatgt 2729079  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 8402452 - 8402392
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaa 99  Q
    ||||| |||| |||||||||||  ||||||| |||||||| ||||| ||||||| ||||||    
T  8402452 gaagaaaatataaagtgaagaacattcatttcaagttccatgacattgcaagatggaagaa 8402392  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 19219112 - 19219068
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagaca 83  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||    
T  19219112 gaagacaatacaaagtgaataaaattcatttcaaattccaagaca 19219068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 41 - 410
Target Start/End: Complemental strand, 14921938 - 14921575
Alignment:
Q  41 agacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagag 140  Q
    |||||||||||||||||||||  ||||||||| ||||||| |||| ||||| |||||||||||||||||| ||| |||||||||| |||| ||||| |||    
T  14921938 agacaatacaaagtgaagaaaaatcatttgaatttccaaggcatcacaagacagaagaacgcttgaaaaagggttgaaaactgcataattcgcgcaggag 14921839  T
Q  141 gggatgcctcatgcgcccc-acgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtgg---aaaaaccctattttcactct 236  Q
    ||| |||||||||||||||  ||||| ||||  || ||| |||| |||||||||||||||||| || ||||| ||||   |||||  |||||||||||||    
T  14921838 gggctgcctcatgcgcccctgcgcattgacaagggtagggagtgttgtttgcttgttttccaatcctttttttgtgggaaaaaaaatctattttcactct 14921739  T
Q  237 cttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaaga 335  Q
    ||||| || ||||||||||| |||||||          |||||||||||||  ||| ||||||||  |||| |||| ||||||| |||||| ||| | ||    
T  14921738 cttaatccttaagtaatcattcactata---------ccttgcacactctttgattcattcagaaggctagcggtaaaaggcaaaggtcaatcatcacga 14921648  T
Q  336 gcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    | |||||||  |||||  |||||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  14921647 gtttcaaggcagagga--tccatccttctattgttctctctagggtatgtttttcaattgttttgtaatgatgtc 14921575  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 195 - 407
Target Start/End: Original strand, 25460338 - 25460545
Alignment:
Q  195 ttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-tta 293  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  || |||| |||| || |||    
T  25460338 tttttcaagctgtttttggtggaaaaaccctattttcactctcttaatccctaagtaatcatacactataaatagagaccttttcacaatcttttattta 25460437  T
Q  294 ttcagaaaactagt-ggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 392  Q
    |||||||| ||| | ||||||||||||||||||| ||| | |||   |||     ||||| |||| ||| |||||||||||||||| |||||||||||||    
T  25460438 ttcagaaagctaatgggtacaaggcaagggtcaaacatcaggag--gcaa-----aggatatccaccatcctcttgttctctctagtgtatgtttttcta 25460530  T
Q  393 ttgttttgtgatgat 407  Q
    ||||||||| |||||    
T  25460531 ttgttttgtaatgat 25460545  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 220 - 406
Target Start/End: Original strand, 24188450 - 24188632
Alignment:
Q  220 aaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattattcagaaaactagtggtacaaggcaa 319  Q
    |||| |||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||| ||| ||     ||||| ||| |||| ||||||||||||    
T  24188450 aaccttattttcactctcttaacccctgagtaatcatacacaataaatagagacccttgcatactattc----attcaaaaagctagcggtacaaggcaa 24188545  T
Q  320 gggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatga 406  Q
    |||||||| ||||||||||||| ||| |||||||| |||| | ||| | ||||||||||||| |||||||||||| ||||| |||||    
T  24188546 gggtcaaggattaagagcttcacggaagaggatcttcatcttactcatattctctctagggtgtgtttttctattattttgagatga 24188632  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 234 - 408
Target Start/End: Original strand, 18819131 - 18819305
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    ||||||||| |||||||||| ||| | ||||||||||||| |||||| |||||| |||| ||||||||| |||  |||||||||||| |||||| ||| |    
T  18819131 tctcttaactcctaagtaatgatgtattataaatagagacccttgcaaactcttttatttattcagaaagctaacggtacaaggcaatggtcaaacatca 18819230  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
    | |||||| ||   ||||||||| ||| | ||||||||||  ||||||||||||||||||||||||||| ||||||    
T  18819231 a-agcttccagacagaggatctctatcctcctcttgttcttactagggtatgtttttctattgttttgtaatgatg 18819305  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 409
Target Start/End: Complemental strand, 17884224 - 17884052
Alignment:
Q  236 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaag 334  Q
    |||||| | ||||||||| ||| |||||||||||||||  |||||||  ||| |||| ||| ||||| ||||| |||||||||||||||||||||| | |    
T  17884224 tcttaaactctaagtaattatg-actataaatagagaccattgcacatacttttattcatttagaaagctagtagtacaaggcaagggtcaagcatca-g 17884127  T
Q  335 agcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    || |||||||  |||||| ||  |||| ||||||| || |||||||||||||||||||||||||||| |||||||    
T  17884126 agattcaaggcagaggatttctgtcatcctcttgtcctttctagggtatgtttttctattgttttgtaatgatgt 17884052  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 27917712 - 27917560
Alignment:
Q  208 ttttggtggaaaaa-ccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaacta 305  Q
    |||||||||||||| ||||| |||  ||| |||||| || ||||||||||| ||||||| ||||||| |||||||||| || |||| ||||||||| |||    
T  27917712 ttttggtggaaaaaaccctaattttgctcccttaactccgaagtaatcatggactataa-tagagacccttgcacactattttattcattcagaaagcta 27917614  T
Q  306 gtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatc 359  Q
    | ||||||||||||||||||||||| | |||||||| ||  |||||||||||||    
T  27917613 gcggtacaaggcaagggtcaagcatcaggagcttcatggtagaggatctccatc 27917560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 234 - 401
Target Start/End: Complemental strand, 18235987 - 18235807
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-------------attcagaaaactagtggtacaaggcaag 320  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||| ||||             || |||||| |||| ||||||||| |||    
T  18235987 tctcttaacccctaagtaatgatgcattatagatagagactcttgtacacacttttattcatttagaaaagcatacagaaagctagcggtacaaggtaag 18235888  T
Q  321 ggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||||| ||||| || ||||| ||||||||||||| |  |||| ||||||||| |||||||||||||||||||||||    
T  18235887 ggtcaagcatcaagagatttaaggaagaggatctccatcctcttcttattctctctatggtatgtttttctattgttttgt 18235807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 34063742 - 34063625
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 138  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| |  |||  |||||||||| ||||||| ||||||||||||| |||||| ||| |    
T  34063742 gaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgtgagacggaagaacgctagaaaaat-gtcgaaaactgcataatttgtgcagg 34063644  T
Q  139 aggggatgcctcatgcgcc 157  Q
    || || |||||||||||||    
T  34063643 agaggctgcctcatgcgcc 34063625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 409
Target Start/End: Complemental strand, 21844485 - 21844312
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-ttattcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| ||||||||||| || || |||||||||| || | ||||||| ||| || |||||||| || |||| ||| ||||||| |||||||||| |     
T  21844485 tctcttaaaccctaagtaataattcaatataaatagaaacccctgcacacacttttatttattcagtaagctagcggttcaaggcatgggtcaagca-tc 21844387  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||  |||||| | |||  | |||| ||||||| |||||| ||||||||  ||||||||| |||||||    
T  21844386 agagcttcaaggcagaggatttacatgctcctctcgttctctttagggtttgtttttc--ttgttttgtaatgatgt 21844312  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 39732119 - 39732196
Alignment:
Q  244 cctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaag 320  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||| |||| ||||||||| |||| |||||||||||||    
T  39732119 cctaagtaatgatgcactataaatagagactctttcacacacttttattcattcagaaagctagcggtacaaggcaag 39732196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 409
Target Start/End: Complemental strand, 21842858 - 21842683
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| ||||||||||| || || |||||| ||| || |||||| || ||| |||| ||||||||| |||| ||| ||||||| || |||||||| |    
T  21842858 tctcttaaaccctaagtaataattcaatataaacagaaacccttgcatacacttttatttattcagaaagctagaggttcaaggcatggttcaagcatca 21842759  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
     |||||||||||  || ||| | |||  | |||| ||||||| ||||||||| |||| ||||||||||| |||||||    
T  21842758 -gagcttcaaggcagatgatttacatgctcctctcgttctctttagggtatgcttttatattgttttgtaatgatgt 21842683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 344
Target Start/End: Original strand, 24047785 - 24047895
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||| ||  |||| ||| ||||| ||||||||| |||| ||| | |||||| |     
T  24047785 tctcttaaaccctaagtaatgatgcactataaatagagattcttgcacacactcttattcattgagaaagctagtggtataaggaaagagccaagca-tc 24047883  T
Q  333 agagcttcaagg 344  Q
    ||||||||||||    
T  24047884 agagcttcaagg 24047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 9504471 - 9504541
Alignment:
Q  340 caaggacgaggatctccatcattctcttgttctctctagggtatg-tttttctattgttttgtgatgatgt 409  Q
    |||||| ||||||||||||| | |||||||||||||||||||||| |||||| |||||||||| |||||||    
T  9504471 caaggaagaggatctccatcctcctcttgttctctctagggtatgttttttccattgttttgttatgatgt 9504541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 9515837 - 9515907
Alignment:
Q  340 caaggacgaggatctccatcattctcttgttctctctagggtatg-tttttctattgttttgtgatgatgt 409  Q
    |||||| ||||||||||||| | |||||||||||||||||||||| |||||| |||||||||| |||||||    
T  9515837 caaggaagaggatctccatcctcctcttgttctctctagggtatgttttttccattgttttgttatgatgt 9515907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 17862842 - 17862938
Alignment:
Q  236 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||| || |||||||| |||||||||||||| ||||| |||||||| ||| |||| |||||| ||  |||||||||||||||||||||| ||||||    
T  17862842 tcttaaaccttaagtaatgatgcactataaatatagacttttgcacacacttttattcattcag-aagttagtggtacaaggcaagggtcaggcatta 17862938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 18818910 - 18819033
Alignment:
Q  34 tcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgc 133  Q
    |||| ||||||||||||||||||||||| |||| || |||||||||||||| ||||||  |||||| || | ||||| ||  |||||||||| |||| ||    
T  18818910 tctttgaagacaatacaaagtgaagaaaattcaattcaagttccaagacattgcaagacggaagaatgc-tcaaaaagggatgaaaactgcaaaattcgc 18819008  T
Q  134 gcaagaggggatgcctcatgcgccc 158  Q
     |||||||    |||||||||||||    
T  18819009 acaagaggcaccgcctcatgcgccc 18819033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 31262413 - 31262497
Alignment:
Q  236 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaa 319  Q
    ||||| |||||||||||| ||||||||||||||||||| |||| |||||||| |||| ||| ||||| |||  ||||||||||||    
T  31262413 tcttatcccctaagtaatgatgcactataaatagagacacttgtacactcttttattcatttagaaatctaacggtacaaggcaa 31262497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 30999348 - 30999396
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||    
T  30999348 ttcttttgttctctctagggtatgtttttctattgttttcttatgatgt 30999396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 17415065 - 17414958
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 138  Q
    |||||||| | |||||||||||| ||||||| |||||| ||||||| ||||||  ||||||||||  ||||| || | |||||| || |||| || || |    
T  17415065 gaagacaacaaaaagtgaagaaaattcatttcaagttctaagacattgcaagacggaagaacgctcaaaaaagggacaaaaactacataattcgcacagg 17414966  T
Q  139 aggggatg 146  Q
    ||||||||    
T  17414965 aggggatg 17414958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 31274414 - 31274461
Alignment:
Q  363 ctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  31274414 ctcttgttctctctagagtatatttttctattgttttgtaatgatgtc 31274461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 15454163 - 15454070
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaag 327  Q
    |||||||| ||||||||||| ||| ||||||||| ||||| ||||||||| ||| |||| ||| ||||| |||| |||||||| ||| |||||||    
T  15454163 tctcttaaaccctaagtaatgatgaactataaatcgagacccttgcacacactt-tattcatttagaaacctaggggtacaagacaatggtcaag 15454070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 20518829 - 20518747
Alignment:
Q  327 gcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||| ||||||||||||||  | |||||||||||| || || || |||||| |||||| ||||||||| |||||| |||||||    
T  20518829 gcatcaagagcttcaaggaatatgatctccatcatccttttattttctctaaggtatgcttttctattattttgtaatgatgt 20518747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 27416810 - 27416757
Alignment:
Q  347 gaggatctccatcattctcttgttctctctagggtatgtttttctattgttttg 400  Q
    ||||||||||||| | ||||||||||||||  |||||| |||||||||||||||    
T  27416810 gaggatctccatcctcctcttgttctctctgaggtatgcttttctattgttttg 27416757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 25474585 - 25474632
Alignment:
Q  363 ctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    ||||| |||| |||||||||| ||||||||||||||||| ||||||||    
T  25474585 ctcttattctttctagggtatctttttctattgttttgttatgatgtc 25474632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 16593652 - 16593614
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  16593652 gaagacaatacaaagtgaagaaaattcatttcaagttcc 16593614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 21848104 - 21848035
Alignment:
Q  262 ataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 330  Q
    |||||||||||||||||||||| ||| |||| |||||||  | |||| ||||||| ||||| ||||||||    
T  21848104 ataaatagagactcttgcacacacttttattcattcagattagtagtagtacaagacaaggttcaagcat 21848035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 27417160 - 27417123
Alignment:
Q  43 acaatacaaagtgaagaaacttcatttgaagttccaag 80  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  27417160 acaatacaaagtgaagaaaattcatttcaagttccaag 27417123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 191 - 410
Target Start/End: Original strand, 21549058 - 21549277
Alignment:
Q  191 cttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta 290  Q
    |||||||| ||||| ||| |||||||||||||| |||||| ||| |||||||||  ||||||||||||| |||||||| |||| ||||||||||||| ||    
T  21549058 cttgtttttcaagctgttattggtggaaaaacc-tatttttactttcttaacccaaaagtaatcatgcaatataaataaagacccttgcacactctttta 21549156  T
Q  291 tt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 389  Q
    || ||||| ||| ||||  ||||||| ||| |||||||||| | || ||||||||  ||||||||||||| | |||||||||||||||||||||||||||    
T  21549157 ttcattcaaaaatctagcagtacaagtcaatggtcaagcatcaggatcttcaaggcagaggatctccatcctcctcttgttctctctagggtatgttttt 21549256  T
Q  390 ctattgttttgtgatgatgtc 410  Q
    |||||||||||| ||||||||    
T  21549257 ctattgttttgtaatgatgtc 21549277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 191 - 410
Target Start/End: Complemental strand, 52270935 - 52270708
Alignment:
Q  191 cttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactc-------ttgcacac 283  Q
    |||||||| ||||  ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||       || ||||     
T  52270935 cttgtttttcaagttgtttttggtggaaaagctctattttcactctcttaacccctaagtaatcatgcaatataaatagagactcttcactgttacacaa 52270836  T
Q  284 tcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggta 382  Q
    |||| |||| ||||||||| |||| ||||||||||||||| ||||||| | |||||||| ||   ||||||| |||| | ||||||||||||||||   |    
T  52270835 tcttttattcattcagaaagctagcggtacaaggcaagggccaagcatcaggagcttcacggcaaaggatcttcatcctcctcttgttctctctagatga 52270736  T
Q  383 tgtttttctattgttttgtgatgatgtc 410  Q
    ||||||||||||||||||| ||||||||    
T  52270735 tgtttttctattgttttgtaatgatgtc 52270708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 407
Target Start/End: Original strand, 25778148 - 25778361
Alignment:
Q  195 ttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-a 293  Q
    |||| |||| ||||||| ||| |||| || ||||||  |||| ||||| | |||||||| |||||||||||||||||||  |||||||||||| |||| |    
T  25778148 tttttcaagtcgttttttgtgcaaaacccttatttttcctctattaactcttaagtaataatgcactataaatagagacctttgcacactcttttattca 25778247  T
Q  294 ttcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctat 393  Q
    || | |||  ||   |||||||||||||||||| |||   |||||||||||| ||| ||||||||| | |||| ||||||||||||||||||||||||||    
T  25778248 tttataaagataacagtacaaggcaagggtcaaacatctggagcttcaaggaagagcatctccatcctcctctcgttctctctagggtatgtttttctat 25778347  T
Q  394 tgttttgtgatgat 407  Q
    |||||||| |||||    
T  25778348 tgttttgtaatgat 25778361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 409
Target Start/End: Original strand, 23506183 - 23506403
Alignment:
Q  190 gcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgt 289  Q
    ||||||||||||||  ||| |||||||| |||  |||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| |||   || |    
T  23506183 gcttgttttccaagaagttcttggtggataaaatctattttcactctcttgagccctaagtaataatgcactataaatagagacccttggacagaattct 23506282  T
Q  290 att-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 388  Q
    |||  ||||||||  |||  |||||||||||| ||  ||||||||||||||| |||    ||||||||||| | ||||| |||||||||| | |||||||    
T  23506283 attctttcagaaagttagcagtacaaggcaagtgtttagcattaagagcttcgaggcatcggatctccatcctcctcttattctctctagagaatgtttt 23506382  T
Q  389 tctattgttttgtgatgatgt 409  Q
    ||||||||||||| |||||||    
T  23506383 tctattgttttgtaatgatgt 23506403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 207 - 388
Target Start/End: Complemental strand, 25665480 - 25665296
Alignment:
Q  207 tttttggtggaaaaa--ccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaac 303  Q
    |||||||||||||||  |||||||||||| || | ||||| ||||||| |||||||| ||||||||||| |||||||| | ||  ||| ||||| ||| |    
T  25665480 tttttggtggaaaaaaaccctattttcacactttgaacccataagtaagcatgcactgtaaatagagacccttgcacaatttttaattcattcataaagc 25665381  T
Q  304 tagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 388  Q
    |||  ||||||| |||||||||||||| | |||||||||||  || |||||||||| | ||||||||||||||||| ||||||||    
T  25665380 tagcagtacaagacaagggtcaagcatcatgagcttcaaggcagatgatctccatcctcctcttgttctctctaggatatgtttt 25665296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 26854221 - 26854102
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 138  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||| | ||||||||||||||||| |||||| || || || |    
T  26854221 gaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgcaagatggaagaacac-tgaaaaatggtcgaaaattgcagagttcgcacatg 26854123  T
Q  139 aggggatgcctcatgcgcccc 159  Q
    |||||||||||||||| ||||    
T  26854122 aggggatgcctcatgcacccc 26854102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 344
Target Start/End: Complemental strand, 26854036 - 26853873
Alignment:
Q  182 tgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcac 281  Q
    |||||||||  |||| ||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||||| || |||||||||||||||| |||| ||    
T  26854036 tgatgtttgtctgttctcccagccgtttttggtggaaaaacactattttcactatctcaacccctaagtaatgatacactataaatagagacccttgaac 26853937  T
Q  282 actcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagg 344  Q
    ||| || |||| ||||||||| |||    ||  ||||||| ||||||||| |||||||||||||    
T  26853936 actattttattcattcagaaagctaacaatatgaggcaagagtcaagcatcaagagcttcaagg 26853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 401
Target Start/End: Original strand, 25730937 - 25731096
Alignment:
Q  243 ccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttca 341  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||| |||| ||| | |||  ||   ||||||||||||||| || ||| | |||||| |    
T  25730937 ccctaagtaataatgcactataaatagagacctttgcatactcttttattcatttataaagataacagtacaaggcaagggtaaaacatcaggagcttaa 25731036  T
Q  342 aggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||| |||||||| |||| | |||  |||||||||||||||||||||| |||||||||||    
T  25731037 aggaagaggatcttcatcctcctcccgttctctctagggtatgtttttatattgttttgt 25731096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 34533082 - 34533257
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| | ||||||||||||    |||||||||||||||||||||||  |  |||| ||| |||||||||   || ||| ||| ||||||||||| |    
T  34533082 tctcttaaactctaagtaatcatatgatataaatagagactcttgcacacattcttattcatttagaaaactaacagttcaatgcacgggtcaagcatca 34533181  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
      || |||||||| |||||||| |||| | |||||||||||||||||||||||||||| |||||||||  |||||||    
T  34533182 t-agtttcaaggaagaggatcttcatcctcctcttgttctctctagggtatgtttttcgattgttttggtatgatgt 34533257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 409
Target Start/End: Original strand, 50047619 - 50047714
Alignment:
Q  313 aaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| ||||| ||| | |||||| | ||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  50047619 aaggcaagggtcaaacatta-gagttccaaggaaggggatctccatcctcctcttgttctctctagggtatgtttttatattgttttgtaatgatgt 50047714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 398
Target Start/End: Original strand, 31314004 - 31314161
Alignment:
Q  241 acccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagctt 339  Q
    |||| |||| ||| ||||||||||||||||||   |||  ||||||| |||| ||||||||| |||| |||||||||  |||||||| ||| | |||||     
T  31314004 acccttaagcaatgatgcactataaatagagatcattgttcactcttttatttattcagaaagctagcggtacaaggttagggtcaaccatca-gagctg 31314102  T
Q  340 caaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttt 398  Q
    |||||  |||||||||||||    |||||||||||||| ||| ||||||||||||||||    
T  31314103 caaggcagaggatctccatccccatcttgttctctctatggtttgtttttctattgttt 31314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 27460540 - 27460443
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 330  Q
    |||||||||||||||||||| || |||||||||||||||| ||| ||||||||| ||||  ||||||||||||| ||||||   ||||| ||||||||    
T  27460540 tctcttaacccctaagtaatgatccactataaatagagacccttacacactcttttattctttcagaaaactagcggtacattacaaggatcaagcat 27460443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 25665670 - 25665590
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 120  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||| ||||||  |||||||| |||||||| | |||||||    
T  25665670 aagacaatacaaagtgaagaaaaatcatttgaagttccaaggcattgcaagacggaagaacgattgaaaaaggttcgaaaa 25665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 409
Target Start/End: Complemental strand, 15298580 - 15298359
Alignment:
Q  187 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 286  Q
    |||||||||||| ||||  ||||| ||| ||||| || ||||||   |||||||||||||||||||| ||| | ||||||| |||||  || |||||| |    
T  15298580 tttgcttgtttttcaagttgtttt-ggttgaaaacccatatttttcttctcttaacccctaagtaatgatgtattataaattgagacctttccacactat 15298482  T
Q  287 tgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgt 385  Q
    | |||  ||| ||||| |||| ||||||| ||||  ||||| ||| | ||| | |||||  |||||| | || | | ||||||||||||||||||||||     
T  15298481 tttatccattaagaaagctagcggtacaacgcaattgtcaaacatca-gagttccaaggcagaggatattcaccctcctcttgttctctctagggtatgc 15298383  T
Q  386 ttttctattgttttgtgatgatgt 409  Q
    |||||| ||||||||| |||||||    
T  15298382 ttttcttttgttttgtaatgatgt 15298359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 23505969 - 23506040
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 110  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||  |||||| |||| |||||| ||||||    
T  23505969 gaagacaatacaaagtgaagaaaattcatttcaagttccaagacaatgcaagacagaataacgctggaaaaa 23506040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 410
Target Start/End: Complemental strand, 14745102 - 14744932
Alignment:
Q  233 ctctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattattcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    ||||||||||||||||||||| ||| || |||| || ||| | ||||||||||||  |||| | ||    ||||  ||| ||||||||||||||||||      
T  14745102 ctctcttaacccctaagtaatgatgtaccataagtaaagatttttgcacactctt--attaattag----ctagcagtataaggcaagggtcaagcatct 14745009  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
     ||||||||||   || ||||| |||| |  |||||||||||||| | ||||||||||||||||||||| ||||||||    
T  14745008 -gagcttcaagacagatgatctgcatcctcttcttgttctctctatgatatgtttttctattgttttgtaatgatgtc 14744932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 30675992 - 30676053
Alignment:
Q  348 aggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||| | |||||  |||||||||||||||||||||||||||||||| |||||||    
T  30675992 aggatctccatcctcctcttagtctctctagggtatgtttttctattgttttgttatgatgt 30676053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 26658002 - 26658107
Alignment:
Q  291 ttattcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttc 390  Q
    |||||||||| ||| |  || ||||||||||||||||||| | ||||||||||||  | ||| ||  ||||||||||||||||||||||||||||||||     
T  26658002 ttattcagaacactggcagttcaaggcaagggtcaagcatca-gagcttcaagga--atgatttct-tcattctcttgttctctctagggtatgttttt- 26658096  T
Q  391 tattgttttgt 401  Q
    |||||||||||    
T  26658097 tattgttttgt 26658107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 23223890 - 23224003
Alignment:
Q  293 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 392  Q
    ||||||||| |||||| | || || ||||||||||||| | ||| | |||||  |||||||| |||| | |||| ||||||  |||||||||||||||||    
T  23223890 attcagaaagctagtgattcacggaaagggtcaagcatca-gagttccaaggcagaggatcttcatcctcctctagttctc--tagggtatgtttttcta 23223986  T
Q  393 ttgttttgtgatgatgt 409  Q
    ||||||||| |||||||    
T  23223987 ttgttttgtaatgatgt 23224003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 408
Target Start/End: Complemental strand, 11769558 - 11769490
Alignment:
Q  340 caaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
    |||||| ||||||||||||| | ||||| ||||||||| ||| ||||||| ||||||||||| ||||||    
T  11769558 caaggaagaggatctccatcctcctctttttctctctatggtgtgtttttatattgttttgttatgatg 11769490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 52271146 - 52271027
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 138  Q
    ||||||||||||||||||||||| ||||||| || |||||||  || ||||||  ||||||||   | |||| |||| |||||||  ||||| | |||||    
T  52271146 gaagacaatacaaagtgaagaaaattcatttcaaattccaaggaattgcaagacggaagaacgggcg-aaaagggtcaaaaactgttgaattcgtgcaag 52271048  T
Q  139 aggggatgcctcatgcgcccc 159  Q
    ||||| ||||| |||||||||    
T  52271047 aggggttgccttatgcgcccc 52271027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 11984770 - 11984708
Alignment:
Q  347 gaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||| | ||||||||||||||| | ||| ||||||| |||||||| ||||||||    
T  11984770 gaggatctccatcctcctcttgttctctctaagatatatttttcttttgttttgcgatgatgt 11984708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 21548861 - 21548974
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa-ctgcagaatttgcgcaa 137  Q
    ||||| |||||||  |||| ||| |||||||||||||||||| |||  |||||   ||||| ||| |||||| ||| ||||| ||||| |||||||||||    
T  21548861 gaagataatacaagttgaaaaaaattcatttgaagttccaaggcattacaagacgaaagaatgctagaaaaagggttgaaaaactgcataatttgcgcaa 21548960  T
Q  138 gaggggatgcctca 151  Q
    |||||  |||||||    
T  21548961 gagggactgcctca 21548974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 25126900 - 25126997
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 330  Q
    |||||||||||| ||||| | ||| | ||||||||||||  |||| ||||| || |||| ||||| ||| ||||  ||||||||||||||||||||||    
T  25126900 tctcttaaccccaaagtagtgatgtattataaatagagatccttgaacacttttttattcattcaaaaagctagcagtacaaggcaagggtcaagcat 25126997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 12810735 - 12810783
Alignment:
Q  358 tcattctcttgttctctctagggtatgtttttctattgttttgtgatga 406  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||| ||||    
T  12810735 tcattctcttgttctctttagggtatgcttttctattattttgttatga 12810783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 23519272 - 23519224
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| |||  ||||||||||||||||||||| |||||||    
T  23519272 ttctcttgttctctttagactatgtttttctattgttttgttatgatgt 23519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 11769895 - 11769857
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  11769895 gaagacaatacaaagtgaagaaaattcatttcaagttcc 11769857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 9328579 - 9328616
Alignment:
Q  364 tcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||| || ||||||||||||||||||||||||||    
T  9328579 tcttgttccctatagggtatgtttttctattgttttgt 9328616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 9353542 - 9353579
Alignment:
Q  364 tcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||| || ||||||||||||||||||||||||||    
T  9353542 tcttgttccctttagggtatgtttttctattgttttgt 9353579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 19257712 - 19257655
Alignment:
Q  34 tcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 91  Q
    |||| ||||||||||||||||||||||| || |||| || ||||||| ||| ||||||    
T  19257712 tctttgaagacaatacaaagtgaagaaaatttatttcaatttccaaggcattgcaaga 19257655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 185 - 409
Target Start/End: Original strand, 11437801 - 11438026
Alignment:
Q  185 tgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacact 284  Q
    |||||| ||||||||||||    |||||||||||||| | |||||||||||| |||||||||||||||| |||||  ||||||| ||||  || ||||||    
T  11437801 tgtttgtttgttttccaaggtaattttggtggaaaaatcatattttcactctgttaacccctaagtaatgatgcatcataaatatagaccattacacact 11437900  T
Q  285 cttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtat 383  Q
     || |||| ||| ||||| ||||| |||||||||||||||||||||| | ||||||||| |  ||||||||||||| |||||||||||||| ||||||||    
T  11437901 attttattcatttagaaagctagtagtacaaggcaagggtcaagcatcatgagcttcaaagcagaggatctccatccttctcttgttctctgtagggtat 11438000  T
Q  384 gtttttctattgttttgtgatgatgt 409  Q
    |||||| |||||| |||| |||||||    
T  11438001 gtttttttattgtcttgtaatgatgt 11438026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 191 - 410
Target Start/End: Original strand, 18771340 - 18771560
Alignment:
Q  191 cttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta 290  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||| | ||||||||| ||||||||||||| ||    
T  18771340 cttgttttccaatatgtttttggtggaaaacccctattttcactctcttaatccctcagtaatcatacactcttaatagagacccttgcacactctttta 18771439  T
Q  291 tt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 389  Q
    || ||| ||||| | |  | |||||||||| |||||||||| | |||||||||||  || |||||||||| |  | ||||||||||||| |||| |||||    
T  18771440 ttcatttagaaatccatcgatacaaggcaatggtcaagcatcaggagcttcaaggtagatgatctccatcctcattttgttctctctagagtatcttttt 18771539  T
Q  390 ctattgttttgtgatgatgtc 410  Q
    |||||||||||| ||||||||    
T  18771540 ctattgttttgtaatgatgtc 18771560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 401
Target Start/End: Complemental strand, 30850731 - 30850549
Alignment:
Q  217 aaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaag 315  Q
    ||||| |||| ||||| |||||||||||||||||||| ||  | | ||||||||||| | |||| | |||| |||| ||||||||| |||| ||||||||    
T  30850731 aaaaagcctaatttca-tctcttaacccctaagtaatgatt-attgtaaatagagacccatgcaaattcttttattcattcagaaagctagcggtacaag 30850634  T
Q  316 gcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    ||||||||||| ||| ||||| || ||||  ||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  30850633 gcaagggtcaaacat-aagagatttaaggcagaggatctccatcctcctattgttctctctagggtatgtttttctattgttttgt 30850549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 225 - 408
Target Start/End: Original strand, 30544171 - 30544358
Alignment:
Q  225 tattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaa--ctagtggtacaaggcaagg 321  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||| |||| ||| ||||||  |||||||| |||||||||     
T  30544171 tattttcactctcttaacccctaagtaatcatacactataaatagagatcattgcacactcttttattcatttagaaaaggctagtggttcaaggcaaga 30544270  T
Q  322 gtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggta-tgtttttctattgttttgtgatgatg 408  Q
    ||||| || || | |||||||||   ||||||| |||| | |||||||| ||| || | || | ||||| ||||||||||| ||||||    
T  30544271 gtcaaacaataggcgcttcaaggcataggatcttcatcctcctcttgttttctttatgatattttttttttattgttttgtaatgatg 30544358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 187 - 408
Target Start/End: Complemental strand, 24927565 - 24927344
Alignment:
Q  187 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 286  Q
    ||||| |||||||  |||||||||||   | |||||| | |||||  |||||||||||||||||||||||  | ||||||||||||| ||||||||   |    
T  24927565 tttgcatgttttcttagccgtttttgaatggaaaaccatgttttctttctcttaacccctaagtaatcatctaatataaatagagacccttgcacaaatt 24927466  T
Q  287 tgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgt 385  Q
    | |||| ||||| | |  ||||||| ||||||||  ||||| ||  | |||||||||||  |||||||| |||| | | |||||||||| ||||||||||    
T  24927465 t-tattcattcatatagttagtggtccaaggcaaatgtcaaacaccaggagcttcaaggtggaggatcttcatcctccccttgttctctttagggtatgt 24927367  T
Q  386 ttttctattgttttgtgatgatg 408  Q
    |||||||||||||||| ||||||    
T  24927366 ttttctattgttttgtaatgatg 24927344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 11437633 - 11437753
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 138  Q
    |||||||||||| |||||||| | |||||||||||||||||  ||| ||||||  ||||||| ||||||||| | ||||||||| |||||||||| ||||    
T  11437633 gaagacaatacagagtgaagataattcatttgaagttccaaagcattgcaagacggaagaacacttgaaaaaggatcgaaaactacagaatttgcacaag 11437732  T
Q  139 aggggatgcctcatgcgcccc 159  Q
    ||||| | ||||||| |||||    
T  11437733 aggggttacctcatgtgcccc 11437753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 13583216 - 13583100
Alignment:
Q  293 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 392  Q
    ||||| ||| |||| ||||||||||||||||||| ||| |||||||||||||  ||||||||||| ||  ||||| |||| | ||||||||||||||| |    
T  13583216 attcataaagctagaggtacaaggcaagggtcaaccatcaagagcttcaaggcggaggatctccaccaccctcttattctttgtagggtatgtttttcca 13583117  T
Q  393 ttgttttgtgatgatgt 409  Q
    ||||||||| |||||||    
T  13583116 ttgttttgtaatgatgt 13583100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 344
Target Start/End: Original strand, 18786125 - 18786245
Alignment:
Q  225 tattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggt 323  Q
    ||||||||||||||||| |||||||||||||| |||||| ||| |||||  ||||||||| || |||| ||| ||||| | |  ||||||||| || |||    
T  18786125 tattttcactctcttaatccctaagtaatcatacactattaattgagacctttgcacacttttttattcatttagaaagccatcggtacaaggaaatggt 18786224  T
Q  324 caagcattaagagcttcaagg 344  Q
    ||||||| | |||||||||||    
T  18786225 caagcatcaggagcttcaagg 18786245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 14184463 - 14184553
Alignment:
Q  310 tacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgt--tctctctagggtatgtttttctattgttt 398  Q
    |||||||||| |||||||||| |||||||||||||  || |||||||||| | ||||| |  ||||||||||||||| |||||||||||||    
T  14184463 tacaaggcaatggtcaagcatcaagagcttcaaggtagaagatctccatcctcctcttattctctctctagggtatgattttctattgttt 14184553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 30543976 - 30544095
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaaga 139  Q
    ||||||||| |||||||||||| ||||||| |||||||||| ||| |||||   |||||| |  ||||||| ||||||||||||| ||| | | ||| ||    
T  30543976 aagacaatataaagtgaagaaaattcatttcaagttccaaggcattgcaaggcggaagaatgagtgaaaaagggtcgaaaactgctgaaatcgtgcatga 30544075  T
Q  140 ggggatgcctcatgcgcccc 159  Q
    |||| ||||||||| |||||    
T  30544076 ggggttgcctcatgtgcccc 30544095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 408
Target Start/End: Original strand, 29292366 - 29292479
Alignment:
Q  294 ttcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctat 393  Q
    ||||||||  ||| |||||||||||| | |||| ||| | |||||||||||| || ||||  |||||||||||||||||||||||||| | ||||| |||    
T  29292366 ttcagaaagttagaggtacaaggcaatgatcaaacatcaggagcttcaaggaagaagatcagcatcattctcttgttctctctagggtgt-tttttttat 29292464  T
Q  394 tgttttgtgatgatg 408  Q
    |||| ||| ||||||    
T  29292465 tgttctgtaatgatg 29292479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 409
Target Start/End: Original strand, 23876395 - 23876571
Alignment:
Q  236 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaag 334  Q
    ||||||||| |||||||| ||||||||||||||||||| ||| |||| |||| |||| ||| || || |||| |||| |||||||| || || ||| | |    
T  23876395 tcttaacccttaagtaatgatgcactataaatagagacacttacacattcttttatttatttagcaagctagcggtataaggcaagtgttaaacatca-g 23876493  T
Q  335 agcttcaaggacgaggat----ctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    | |||||||    |||||    |||| |||| |||||||||| |||| ||||||||||||||||||||||| |||||||    
T  23876494 aacttcaagctataggattgtcctcc-tcatcctcttgttctatctacggtatgtttttctattgttttgtaatgatgt 23876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 407
Target Start/End: Original strand, 28074945 - 28075115
Alignment:
Q  238 ttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagag 336  Q
    |||||||||||||||| |||||||||||||||||||  ||| ||||| || |||| ||||||||  ||||  ||| ||| |||||||||| || | | |     
T  28074945 ttaacccctaagtaattatgcactataaatagagacctttgtacactattttattcattcagaaggctagcagtataagacaagggtcaaaca-tcataa 28075043  T
Q  337 cttcaaggacgaggatctccatcattctcttgttctctctagggtatg-tttttctattgttttgtgatgat 407  Q
    ||| | ||  ||||||||| ||| | ||||||||||  |||||||||| ||||| ||||||||||| |||||    
T  28075044 ctttatggcagaggatctctatcctcctcttgttcttactagggtatgttttttatattgttttgtaatgat 28075115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 410
Target Start/End: Complemental strand, 6887867 - 6887691
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||| |   || |||| ||  ||||| || | |||||||| |||| |||||||| |     
T  6887867 tctcttaacctctaagtaatgatgcactataaatagagac-cttgcagaaatttttattgatatagaaagcttgcggtacaagacaagagtcaagca-tc 6887770  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt-ctattgttttgtgatgatgtc 410  Q
    | ||||| ||||  |||||||| |||| |  | ||||||| |||| ||||||||||| |||||||||||| ||||||||    
T  6887769 atagcttaaaggttgaggatcttcatcctcatattgttctatctaaggtatgtttttcctattgttttgtaatgatgtc 6887691  T

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Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 408
Target Start/End: Complemental strand, 12774525 - 12774352
Alignment:
Q  236 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtat---tattcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||| ||||||||||  |||||||||||||||| |  ||||||||| ||| | |   |||||||||   |||||||||||| |||||||||| ||| |    
T  12774525 tcttaaaccctaagtaacgatgcactataaatagacagccttgcacacacttttttatttattcagaagg-tagtggtacaagacaagggtcaaacatca 12774427  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
     || ||||||||  || ||| | | |  | ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  12774426 -gaacttcaaggcagaagattttccttctactcttgttctctctagattatgtttttctattgttttgtaatgatg 12774352  T

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Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 5153971 - 5154063
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaattt 131  Q
    |||||||||| ||  |||| ||| ||||||| |||||||||||||| ||||||  |||||| ||| |||||| || ||||||||||| |||||    
T  5153971 gaagacaatataacatgaataaaattcatttcaagttccaagacattgcaagacggaagaatgctcgaaaaagggacgaaaactgcaaaattt 5154063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 13583421 - 13583304
Alignment:
Q  39 gaagacaatacaaagtgaagaaac----ttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcg 134  Q
    ||||||||||||||||||| |||     ||||||||||||||||||  || ||||||  |||||||||| |||||| | ||||||||| || |||| ||     
T  13583421 gaagacaatacaaagtgaaaaaaaaaaattcatttgaagttccaaggtattgcaagacggaagaacgctggaaaaaagatcgaaaactacataattcgca 13583322  T
Q  135 caagaggggatgcctcat 152  Q
    || |||||| ||||||||    
T  13583321 catgaggggctgcctcat 13583304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 22892821 - 22892738
Alignment:
Q  312 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtttt 399  Q
    ||||||||||||||||||| | ||| ||||||||  ||||| ||  || |||||||||||||||||||||||||||||||||| ||||    
T  22892821 caaggcaagggtcaagcatca-gagtttcaagga--aggatttct-tccttctcttgttctctctagggtatgtttttctattttttt 22892738  T

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Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 12957076 - 12957135
Alignment:
Q  350 gatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||| ||||||  ||||||||||| ||||||||||||||||| |||||||| |||||||    
T  12957076 gatcttcatcatcatcttgttctctatagggtatgtttttctaatgttttgttatgatgt 12957135  T

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Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 28260074 - 28260027
Alignment:
Q  363 ctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  28260074 ctcttgttctctctatggtatgtttttctattattttatgatgatgtc 28260027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 410
Target Start/End: Complemental strand, 28900853 - 28900810
Alignment:
Q  367 tgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||    
T  28900853 tgttctctctaggatatgtttttctattgttttgttatgatgtc 28900810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 5569833 - 5569737
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 330  Q
    |||||||| ||||||||||||||    ||||||||||||| ||| ||||| ||| |||| |||||||||||||  ||| |||||||||| ||||||||    
T  5569833 tctcttaaaccctaagtaatcatttgttataaatagagaccctt-cacacacttttattcattcagaaaactaacggttcaaggcaaggatcaagcat 5569737  T

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Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 13304978 - 13305027
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||| |||||||||||||||||| ||||||||||||||| | ||||||||    
T  13304978 ttcttttgttctctctagggtatatttttctattgttttcttatgatgtc 13305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 22894433 - 22894392
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaag 80  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  22894433 gaagacaatacaaagtgaagaaaattcttttgaagttccaag 22894392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 23893615 - 23893716
Alignment:
Q  297 agaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgt 396  Q
    ||||| |||| ||| || ||||||||||||| |||| ||| |||||||   |||||||||||| | || ||||||||||||| ||| ||| |||||||||    
T  23893615 agaaagctagcggttcagggcaagggtcaagaatta-gagtttcaaggc--aggatctccatcctcctattgttctctctagagtaggttattctattgt 23893711  T
Q  397 tttgt 401  Q
    |||||    
T  23893712 tttgt 23893716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 389
Target Start/End: Original strand, 24120711 - 24120866
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| | ||||||||||||   ||||||||||||||  |||||||| ||| || | ||||||||| |||  |||  ||| |||||| ||||||| |    
T  24120711 tctcttaaacactaagtaatcatatgctataaatagagaccattgcacacacttttaatgattcagaaagctaccggtttaagccaagggccaagcatca 24120810  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 389  Q
     ||| | |||||  ||||||||| ||| | ||||||||||||||| ||||| |||||    
T  24120811 -gagttccaaggcagaggatctctatcctcctcttgttctctctacggtattttttt 24120866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 30850995 - 30850944
Alignment:
Q  45 aatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaa 96  Q
    ||||||||||||||||| || |||| |||||||||| ||| |||||||||||    
T  30850995 aatacaaagtgaagaaaattaatttcaagttccaagtcattgcaagatagaa 30850944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 32239502 - 32239585
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactg 123  Q
    ||||||||| |||||||||||| ||||||| ||||| |||| ||| |||||| |||| ||||   |||||| |||| |||||||    
T  32239502 aagacaataaaaagtgaagaaaattcatttcaagtttcaaggcattgcaagacagaaaaacgggcgaaaaagggtcaaaaactg 32239585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 14184326 - 14184443
Alignment:
Q  187 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccc-taagtaatcatgcactataaatagagactcttgcacactc 285  Q
    |||||||||||||||||| | ||||    | |||| ||| |||||  |||||||||||| |||||||||||   |||||||||||||  ||||||||| |    
T  14184326 tttgcttgttttccaagctgcttttcaatggaaaatcctgttttctttctcttaaccccctaagtaatcatctgctataaatagagaaccttgcacacac 14184425  T
Q  286 ttgtatt-attcagaaaa 302  Q
    || |||| ||||||||||    
T  14184426 ttttattgattcagaaaa 14184443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 16051830 - 16051786
Alignment:
Q  366 ttgttctctctagggtatgttttt-ctattgttttgtgatgatgt 409  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||    
T  16051830 ttgttctctctaggatatgttttttctattgttttgttatgatgt 16051786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 31436683 - 31436742
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaa 99  Q
    ||||||||||||||||||| ||| || |||| |||||||||| ||| |||||| |||||||    
T  31436683 gaagacaatacaaagtgaaaaaaatt-atttcaagttccaaggcattgcaagacagaagaa 31436742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 193 - 410
Target Start/End: Original strand, 12682 - 12907
Alignment:
Q  193 tgttttccaagccgtttttggtggaaaaaccctattttcactctc----ttaacccct-aagtaatcatgcactataaatagagactcttgcacactctt 287  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| ||||||| ||||||||||||||||||| |||||||||   |    
T  12682 tgttttccaagccgttttgggtggaaaaaccctattttcactctcttaattaacccctaaagtaattatgcactataaatagagacccttgcacaccagt 12781  T
Q  288 gtatt-attcagaaaactagtggtacaaggcaagggt--caagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatg 384  Q
     |||| ||||||||| |||| ||||||||||||||||   |||||| |   ||||||| |  ||||||||||||| | |||||||||||||||| | |||    
T  12782 ttattcattcagaaagctagcggtacaaggcaagggttcaaagcatcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagaatg 12881  T
Q  385 tttttctattgttttgtgatgatgtc 410  Q
     ||||||||| |||||| ||||||||    
T  12882 attttctattattttgtaatgatgtc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 12457 - 12538
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 120  Q
    ||||| ||||||||||||||||| || |||| |||||||||| | || |||||| |||||| |   |||||| |||||||||    
T  12457 gaagaaaatacaaagtgaagaaaatttatttcaagttccaaggcgtcacaagatggaagaagggccgaaaaagggtcgaaaa 12538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 225 - 394
Target Start/End: Complemental strand, 18281884 - 18281714
Alignment:
Q  225 tattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggt 323  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| | || ||||||||| ||||  || ||||||||  ||    
T  18281884 tatttccactctcttaacccctaagtaatcatgcaatataaatagtgacccttgcacactcttttcttcattcagaaagctagcagtgcaaggcaaacgt 18281785  T
Q  324 caagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 394  Q
    ||| ||| | |||||||||||  ||||| ||||||| | ||||||||||||||||||||| ||||||||||    
T  18281784 caaacatcaggagcttcaaggtagaggacctccatcgtcctcttgttctctctagggtatatttttctatt 18281714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 23157510 - 23157337
Alignment:
Q  173 gggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctatttt-cactctcttaacccctaagtaatcatgcactataaatagag 271  Q
    |||| |||||| ||||| |||||||||||||| ||||| ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  23157510 gggaagaagtgttgttttcttgttttccaagctgttttaggtggaaaacccatatttttcactctcttaacccctaagtaatcatgcattataaaaagag 23157411  T
Q  272 actcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagga 345  Q
    || |||||||||| || |||| |||||||||  | |  ||||||||||||||||||||| | |||||||||||||    
T  23157410 acccttgcacactattttattcattcagaaagttggcagtacaaggcaagggtcaagca-tcagagcttcaagga 23157337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 401
Target Start/End: Complemental strand, 16622300 - 16622134
Alignment:
Q  235 ctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaa 333  Q
    ||||||| | |||||||||||| || ||||||||||||||||||||||  ||| |||| ||||| ||| |||||||| ||||||||| |||||||||||     
T  16622300 ctcttaaactctaagtaatcatacattataaatagagactcttgcacatacttttatttattcataaagctagtggttcaaggcaagagtcaagcatta- 16622202  T
Q  334 gagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    ||| | ||||   |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  16622201 gagttccaagactgagggtctccatccttctcttgttctctttagggtatgtttttctattgttttgt 16622134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 25368017 - 25368140
Alignment:
Q  162 gcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaaccc-ctaagtaatcatgcac 260  Q
    ||||||||||| | | |||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||  || ||||||||||||    
T  25368017 gcatggacacatgcaagaagtgatatttgcttgtttttcaagccatttttggtggaaaacccctattttcactctcttaaccctgtacgtaatcatgcac 25368116  T
Q  261 tataaatagagactcttgcacact 284  Q
    |||||||||||||  |||||||||    
T  25368117 tataaatagagaccattgcacact 25368140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 411
Target Start/End: Complemental strand, 7742548 - 7742371
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgt-attattcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| | || ||||| |||  ||||||||||||||||||||||| ||| |    
T  7742548 tctcttaacccctaagcaatgatgcattataaatagagacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaaacatca 7742449  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtcc 411  Q
    | |||||||||   |||||||| |||||| |||||||| |||| | ||||| |||||||| |||||| | |||||||||    
T  7742448 a-agcttcaagtcagaggatcttcatcatcctcttgttttctcaatggtatatttttctactgttttctaatgatgtcc 7742371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 217 - 410
Target Start/End: Original strand, 18178575 - 18178766
Alignment:
Q  217 aaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaag 315  Q
    ||||||| |||||||  |||||||||||||||||||| ||||| ||| ||||||||| |||||||||| || |||| ||||| ||| ||| |||||||||    
T  18178575 aaaaaccttattttct-tctcttaacccctaagtaatgatgcaatatcaatagagacccttgcacacttttttattcattcaaaaagctaatggtacaag 18178673  T
Q  316 gcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||| |||||| || | ||||||| ||||  |||||||| |||| | ||||||||||||||||||||| ||||| ||||||||||| || |||||    
T  18178674 gcaatggtcaaaca-tcagagcttaaaggtggaggatcttcatcctcctcttgttctctctagggtat-tttttttattgttttgtaataatgtc 18178766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 408
Target Start/End: Original strand, 20083929 - 20084122
Alignment:
Q  215 ggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattattc-agaaaactagtggtaca 313  Q
    ||||||||||||||||   ||| |||||||||||||||| ||| | |||||||||| || ||| || |||||| |||| ||  ||||| |||| ||||||    
T  20083929 ggaaaaaccctatttttcttctgttaacccctaagtaatgatgtaatataaatagataccctttcatactcttttattcttttagaaagctagaggtaca 20084028  T
Q  314 aggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
    | | || |||||||||| | || ||||||||| || ||||  |||||| || |||||||||||||||||||||||| |||| |||||| ||||||    
T  20084029 aagaaaaggtcaagcatca-gaacttcaaggaagaagatcctcatcatcctgttgttctctctagggtatgtttttatattattttgtaatgatg 20084122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 409
Target Start/End: Original strand, 20695088 - 20695256
Alignment:
Q  241 acccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagctt 339  Q
    |||| |||||||| ||| |||||||||||||||||||||| ||  ||  ||| ||||||||| ||||||||| ||||||||||||||||| |   | |||    
T  20695088 acccgtaagtaatgatgtactataaatagagactcttgcaaaccttttcattcattcagaaagctagtggtagaaggcaagggtcaagca-tcgcaactt 20695186  T
Q  340 caaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||    |||||| |||| |  |||| ||||||||||||||||||||||||||||||||| |||||||    
T  20695187 caaggcaatggatcttcatcctcttctttttctctctagggtatgtttttctattgttttgtaatgatgt 20695256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 393
Target Start/End: Complemental strand, 19763542 - 19763395
Alignment:
Q  246 taagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagg 344  Q
    |||||| | ||| ||||||||||  ||| |||  |||||||| |||| ||||| ||| |||||||||||||||||||||||| ||| || ||||||||||    
T  19763542 taagtagtgatgtactataaatatggacccttatacactcttttattcattcaaaaagctagtggtacaaggcaagggtcaaacatcaa-agcttcaagg 19763444  T
Q  345 acgaggatctccatcattctcttgttctctctagggtatgtttttctat 393  Q
      |||||||| |||| | ||||||||||||| |||||| ||||||||||    
T  19763443 cagaggatcttcatcctcctcttgttctctcaagggtaagtttttctat 19763395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 22930492 - 22930591
Alignment:
Q  309 gtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
    |||||||||||||||||| ||| |||||||| ||||  ||||||||||||| | || ||||| |||||||| ||||||||||||||||||||| ||||||    
T  22930492 gtacaaggcaagggtcaaacat-aagagctttaaggtagaggatctccatcctccttttgttatctctaggttatgtttttctattgttttgtaatgatg 22930590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 23157704 - 23157585
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaaga 139  Q
    ||||||| | |||||||||||| ||||||| ||||||||||   | |||||| |||||||||| ||||||| ||||||||||||  ||||||||||| ||    
T  23157704 aagacaacagaaagtgaagaaagttcatttaaagttccaaggttttgcaagacagaagaacgcgtgaaaaagggtcgaaaactgttgaatttgcgcagga 23157605  T
Q  140 ggggatgcctcatgcgcccc 159  Q
     | | | |||||||||||||    
T  23157604 tgagctacctcatgcgcccc 23157585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 409
Target Start/End: Complemental strand, 25594246 - 25594141
Alignment:
Q  303 ctagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtg 402  Q
    |||||||| |||||||||||| || ||| | ||||| |||||| |||| ||| |||| | ||||||||||||||| | |||||||||||||||||||||     
T  25594246 ctagtggttcaaggcaagggttaaacatca-gagctccaaggaagagggtcttcatcctcctcttgttctctctaagatatgtttttctattgttttgtt 25594148  T
Q  403 atgatgt 409  Q
    |||||||    
T  25594147 atgatgt 25594141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 26329651 - 26329543
Alignment:
Q  297 agaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgt 396  Q
    |||| |||| |||| ||||||||||||||||||||| |||||||||||   ||||| ||  || ||||||| | ||||||||||||||||||||||||||    
T  26329651 agaacactaatggttcaaggcaagggtcaagcatta-gagcttcaaggc--aggatttct-tccttctcttatcctctctagggtatgtttttctattgt 26329556  T
Q  397 tttgtgatgatgt 409  Q
    ||||| |||||||    
T  26329555 tttgttatgatgt 26329543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 19331723 - 19331814
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 130  Q
    ||||||||||||| ||||||| |  ||||||||||||  ||||||| |||| | ||||||||| |||||||| |||||||||||||| ||||    
T  19331723 gaagacaatacaatgtgaagataagtcatttgaagttataagacattgcaaaacagaagaacgtttgaaaaaaggtcgaaaactgcataatt 19331814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 25681049 - 25681148
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-ttattcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| ||||||| ||||||   |||||||||||||| |||||||||  |  || ||||||||||| |||||||| |||||||||||||||||||||    
T  25681049 tctcttaaaccctaagaaatcatttgctataaatagagacacttgcacacattattaattattcagaaagctagtggttcaaggcaagggtcaagcatta 25681148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 409
Target Start/End: Complemental strand, 31341001 - 31340839
Alignment:
Q  245 ctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaag 343  Q
    |||||||||  || ||||||||||||||| |||||||||||||  ||| |||| |||| ||||   ||||| ||||||||||| |||  | |||||||||    
T  31341001 ctaagtaatggtgtactataaatagagacccttgcacactcttaaattcattctgaaagctagatatacaaagcaagggtcaaacatcga-agcttcaag 31340903  T
Q  344 gacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |  ||||||||| ||| |  |||||||||||||    ||||||||||||||||||||| |||||||    
T  31340902 gcagaggatctcaatcctcttcttgttctctct--tatatgtttttctattgttttgtaatgatgt 31340839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 401
Target Start/End: Original strand, 30791045 - 30791232
Alignment:
Q  212 ggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-ttattcagaaaactagtggt 310  Q
    ||||||||||||| |||||   ||||||||  |||||||||| |||  ||||| ||| |||| ||||||||||||| || |||||||||||  | || |     
T  30791045 ggtggaaaaacccaattttt--tctcttaaatcctaagtaatgatgtgctatatatatagacccttgcacactcttctaattattcagaaagttcgtagg 30791142  T
Q  311 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||| |||| |||||||| | |||||| ||||  ||||||||  ||  | |||||||||||||||||| ||| || ||||||| |||||    
T  30791143 acaaggaaaggttcaagcatca-gagctttaaggcagaggatcttgattctcctcttgttctctctagggcatgcttgtctattgctttgt 30791232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 18872953 - 18872907
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatc 85  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  18872953 gaagacaatacaaattgaagaaaattcatttgaagttccaagacatc 18872907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 409
Target Start/End: Complemental strand, 17695115 - 17694937
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||| | ||| |||| ||||| |||  |||  ||||||||||||| | ||  | |     
T  17695115 tctcttaaaccctaagtaatgatgcactataaatagagagtcttgcacgcacttttattcattcaaaaagttagatgtacaaggcaaggcttaaata-tc 17695017  T
Q  333 agagcttcaaggacgaggatctc---catcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||   | ||| ||   | || | |||| ||||| ||||||||||||| |||||||||||||| |||||||    
T  17695016 agagcttcaaggcaaatgatttccctcctcctcctctggttctttctagggtatgttattctattgttttgtaatgatgt 17694937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 12265140 - 12265092
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  12265140 ttctcttgttctctctagtgtatatttttctattgttttgtaatgatgt 12265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 22643508 - 22643430
Alignment:
Q  334 gagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt---tctattgttttgtgatgatgt 409  Q
    |||||||||||| || ||| |||||||| ||||||||||||||||||||| ||||   ||| ||||||||| |||||||    
T  22643508 gagcttcaaggaagaagatatccatcatcctcttgttctctctagggtattttttctctcttttgttttgtaatgatgt 22643430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 24268670 - 24268718
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  24268670 ttctcttgttctctttagggtatgtttttatattgttttgttatgatgt 24268718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 24345300 - 24345348
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  24345300 ttctcttgttctctttagggtatgtttttatattgttttgttatgatgt 24345348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 17381554 - 17381492
Alignment:
Q  347 gaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||| | || |||||||||||||||||||| ||| ||||||||| | |||||||    
T  17381554 gaggatctccatcctccttttgttctctctagggtatgtatttatattgttttataatgatgt 17381492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 18451766 - 18451729
Alignment:
Q  364 tcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18451766 tcttgttctctctaggatatgtttttctattgttttgt 18451729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 19763787 - 19763716
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 110  Q
    ||||| ||||||||||||||||| ||||||| |||||||||   || | ||||| |||||||||| ||||||    
T  19763787 gaagataatacaaagtgaagaaaattcatttcaagttccaaaggattgaaagatggaagaacgctcgaaaaa 19763716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 30072703 - 30072742
Alignment:
Q  370 tctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  30072703 tctctctagggtatatttttctattgttttgttatgatgt 30072742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 273
Target Start/End: Complemental strand, 24410665 - 24410546
Alignment:
Q  151 atgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaa-ccctattttcactctcttaacccctaag 249  Q
    ||||||||| |||||||   |||| || ||||  ||||||||||||||||||||    ||||||||||||| ||| | |||   ||||||||| ||||||    
T  24410665 atgcgccccgcgcatggctgcaggcagaaagtattgtttgcttgttttccaagc----tttggtggaaaaaaccccacttttcttctcttaactcctaag 24410570  T
Q  250 taatcatgcactataaatagagac 273  Q
    | || |||||||||||||| ||||    
T  24410569 ttataatgcactataaataaagac 24410546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 24842262 - 24842308
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgtgatgat 407  Q
    |||||||||||||||||  ||||| |||||||||||||||| |||||    
T  24842262 ttctcttgttctctctatagtatgcttttctattgttttgttatgat 24842308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 22230318 - 22230371
Alignment:
Q  356 catcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||| |||| ||||||| ||||||||||||||||||| |||||| | |||||||    
T  22230318 catccttcttttgttctatctagggtatgtttttctactgttttcttatgatgt 22230371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 24846613 - 24846674
Alignment:
Q  260 ctataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaag 320  Q
    ||||||||||| |||||||||| | ||| |||| |||||||||| | |||||||||||||||    
T  24846613 ctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 24846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 26329970 - 26329933
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  26329970 aagacaatacaaagtgaagaaaattcatttcaagttcc 26329933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 17028848 - 17028892
Alignment:
Q  365 cttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||||||| |||||||| ||||||||||| ||||| |||||||    
T  17028848 cttgttctctttagggtatatttttctattgatttgtaatgatgt 17028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 20715159 - 20715199
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||||||||| || | |||||||||||||||||||||    
T  20715159 ttctcttgttctctatatgatatgtttttctattgttttgt 20715199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 30072330 - 30072366
Alignment:
Q  40 aagacaatacaaagtgaagaaacttcatttgaagttc 76  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  30072330 aagacaatacaaagtgaagaaatttcatttcaagttc 30072366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 216 - 410
Target Start/End: Original strand, 3573 - 3774
Alignment:
Q  216 gaaaaaccctattttcactctcttaa----cccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggt 310  Q
    ||||||||||||||||||||||||||    |||||||||||| ||||||||||||||||||| ||||||||||  | |||| ||||| |||||||| |||    
T  3573 gaaaaaccctattttcactctcttaattatcccctaagtaattatgcactataaatagagacccttgcacactagtttattcattcataaaactagcggt 3672  T
Q  311 acaaggcaa-gggtca-agcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatg 408  Q
    ||| || || |||||| ||||| |   ||||||| |  ||||||||||||| | |||||||||||||||| | ||| ||||||||| |||||| ||||||    
T  3673 acagggtaaggggtcagagcatcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagaatgattttctattattttgtaatgatg 3772  T
Q  409 tc 410  Q
    ||    
T  3773 tc 3774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 2021 - 2102
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 120  Q
    ||||| ||||||||||||||||| || |||| |||||||||| | || |||||| |||||| |   |||||| |||||||||    
T  2021 gaagaaaatacaaagtgaagaaaatttatttcaagttccaaggcgtcacaagatggaagaagggccgaaaaagggtcgaaaa 2102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 238 - 409
Target Start/End: Original strand, 22262835 - 22263006
Alignment:
Q  238 ttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagag 336  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||| ||| |||| ||| ||||| |||| ||| |||||||||||||||||| | | ||    
T  22262835 ttaaaccctaagtaatgatgcaccataaatagagactcttgcacacacttttattcattgagaaagctagcggttcaaggcaagggtcaagca-tcatag 22262933  T
Q  337 cttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||  ||||||| ||||| |  |||| || ||||||  |||||||||||||||||||||| |||||||    
T  22262934 cttcaaggtagaggatcgccatcctcttcttattttctctaatgtatgtttttctattgttttgtaatgatgt 22263006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 410
Target Start/End: Original strand, 16528117 - 16528279
Alignment:
Q  248 agtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggac 346  Q
    ||||||||||  ||||||||||||||  ||||||||  |  |||| ||| ||||| ||||| || ||||| ||||||||||||||  ||| | |||||      
T  16528117 agtaatcatgtgctataaatagagaccattgcacacattattattcatttagaaagctagttgttcaaggaaagggtcaagcattg-gagttccaaggca 16528215  T
Q  347 gaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||||||| |||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  16528216 gaggatcttcatcctcctcttgttctctctagggtatgtttttgtattgttttgttatgatgtc 16528279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 9396264 - 9396154
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||||| || |||| ||| |||||||||||||| |||||| ||||||| ||  |||| ||||| |||  ||||||||||||||||||||||||||||     
T  9396264 tctcttaaaccttaagaaatgatgcactataaatatagactcgtgcacacactcttattcattcaaaaagatagtggtacaaggcaagggtcaagcatt- 9396166  T
Q  333 agagcttcaagg 344  Q
    ||||||||||||    
T  9396165 agagcttcaagg 9396154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 409
Target Start/End: Complemental strand, 13830542 - 13830391
Alignment:
Q  261 tataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatc 359  Q
    |||||||| |||| ||||||||| ||| |||| ||||| |||  | |||||| |||||||||||||| ||||| ||| | |||||| | |||||||||||    
T  13830542 tataaataaagacccttgcacacacttttattcattcataaagtttgtggtataaggcaagggtcaaacatta-gagttccaaggaaggggatctccatc 13830444  T
Q  360 attctcttgttctctctagggtatg---tttttctattgttttgtgatgatgt 409  Q
     | ||||||||||||||||||||||   ||||| |||| |||||| |||||||    
T  13830443 ctcctcttgttctctctagggtatgatttttttttattattttgtaatgatgt 13830391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 401
Target Start/End: Complemental strand, 26499457 - 26499350
Alignment:
Q  293 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 392  Q
    ||||||||| |||| || ||||||||||||| |||||| | || |||||||||  | |||||||||| | ||||||||||||||| ||||||||||| ||    
T  26499457 attcagaaagctagaggcacaaggcaagggttaagcatca-gatcttcaaggaaaatgatctccatcctcctcttgttctctctaaggtatgtttttata 26499359  T
Q  393 ttgttttgt 401  Q
    ||| |||||    
T  26499358 ttgctttgt 26499350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 315
Target Start/End: Original strand, 28178365 - 28178531
Alignment:
Q  150 catgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaag 249  Q
    ||||||||||  ||||||| ||||  |||||||| |||||||||   |  |||| |||||||| ||||||| ||| |||||||||   |||| ||||| |    
T  28178365 catgcgccccgtgcatggaaacagctaggaagtgttgtttgcttaactctcaagtcgtttttgttggaaaaccccaattttcacttctttaatccctatg 28178464  T
Q  250 taatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaag 315  Q
    ||  ||||||||||||||| || |||||||  ||| || |||| ||||||||| |||||||||||||    
T  28178465 tagccatgcactataaatataggctcttgccgactattttattcattcagaaagctagtggtacaag 28178531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 10976710 - 10976638
Alignment:
Q  255 atgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaa 326  Q
    |||||||||||||||||||||| |||||| ||| |||| ||||||||||||| ||||||||||  ||||||||    
T  10976710 atgcactataaatagagactctggcacacacttttattcattcagaaaactattggtacaaggagagggtcaa 10976638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 15382214 - 15382305
Alignment:
Q  311 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcat--tctcttgttctctctagggtatgtttttctattgttttg 400  Q
    |||||||||||||||||||| |||||||||||||  || ||||| |||| |  ||| || | |||||||||||||||||||| |||||||||    
T  15382214 acaaggcaagggtcaagcatcaagagcttcaaggcagacgatcttcatcctcctcttttatactctctagggtatgtttttcaattgttttg 15382305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 17198487 - 17198379
Alignment:
Q  216 gaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaa 314  Q
    ||||| |||||||||   |||||||||||||||||||| ||| | | ||||||||||| |||||| |||||| |||| ||| | |||||||| | |||||    
T  17198487 gaaaacccctatttttcttctcttaacccctaagtaatgatgtattctaaatagagacccttgcatactcttttattcatttataaaactagcgatacaa 17198388  T
Q  315 ggcaagggt 323  Q
    |||||||||    
T  17198387 ggcaagggt 17198379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 401
Target Start/End: Complemental strand, 32930133 - 32929966
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    ||||||||  |||||||||| || || |||||||||||||||||||| || ||| |||| ||||||||| |||| |||||||| ||| | ||||||| |     
T  32930133 tctcttaattcctaagtaatgatccattataaatagagactcttgcatacacttttattcattcagaaagctagcggtacaagacaatgatcaagca-tg 32930035  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||||  |  |||||| | | |  | ||||| ||||||||| |||  ||||||||||||||||||    
T  32930034 agagcttcattgtagaggattttccttctcctcttattctctctaaggttggtttttctattgttttgt 32929966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 30235902 - 30235860
Alignment:
Q  363 ctcttgttctctctagggtatgtttttctattgttttgtgatg 405  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  30235902 ctcttgttctctctagggtatgtttttctattgttttatgatg 30235860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 15318459 - 15318564
Alignment:
Q  187 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 286  Q
    |||| ||||||| ||||| | |||| ||||||||||| ||||||   ||| ||||||| || ||||| ||||||||| ||||||||||||||| ||| ||    
T  15318459 tttgtttgtttttcaagctgattttagtggaaaaaccttatttttcatcttttaacccatacgtaatgatgcactatgaatagagactcttgcgcacact 15318558  T
Q  287 tgtatt 292  Q
    | ||||    
T  15318559 tttatt 15318564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 12972011 - 12971956
Alignment:
Q  237 cttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 292  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| |||||| ||||    
T  12972011 cttaacccctacgtaatgatgcactataaatagagacccttgcagactcttttatt 12971956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 401
Target Start/End: Original strand, 15318596 - 15318686
Alignment:
Q  311 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    ||||||||  ||| |||||| |||||||| ||||| || |||||  |||   || ||||||||||||||||||||||||| ||||||||||    
T  15318596 acaaggcagtggtgaagcatcaagagctttaaggaagatgatctttatccaccttttgttctctctagggtatgtttttcaattgttttgt 15318686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 409
Target Start/End: Original strand, 15375965 - 15376063
Alignment:
Q  311 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    |||||| ||||||| | ||| | |||||||||||  || |||||| ||| |   |||||||||||||||||||||||||| |||||||||  |||||||    
T  15375965 acaaggtaagggtccatcatcaggagcttcaaggcagacgatctcaatcctcaacttgttctctctagggtatgtttttcaattgttttgaaatgatgt 15376063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 26499748 - 26499655
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgc 133  Q
    |||||||||||||||| |||||| ||||||| ||||| |||| ||| ||||||  ||| |||||| |||||| |  ||||||||||| |||||||    
T  26499748 gaagacaatacaaagtaaagaaaattcatttcaagtttcaaggcattgcaagacggaacaacgctcgaaaaa-gaacgaaaactgcaaaatttgc 26499655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 24507344 - 24507263
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 120  Q
    ||||| ||||||||||||||||| || |||| |||||||||| | || ||||||||||||| |   |||||| |||||||||    
T  24507344 gaagaaaatacaaagtgaagaaaatttatttcaagttccaaggcgtcacaagatagaagaagggccgaaaaagggtcgaaaa 24507263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 15349259 - 15349335
Alignment:
Q  325 aagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||| |||||||| ||||| || |||||  |||   || ||||||||||||||||||||||||| ||||||||||    
T  15349259 aagcatcaagagctttaaggaagatgatctttatccgccttttgttctctctagggtatgtttttcaattgttttgt 15349335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 17198719 - 17198652
Alignment:
Q  43 acaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 110  Q
    ||||||||||||||| ||| || |||| |||||||||| ||| |||||| |||||| |||| ||||||    
T  17198719 acaatacaaagtgaataaaatttatttaaagttccaaggcattgcaagacagaagatcgctcgaaaaa 17198652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 15349108 - 15349198
Alignment:
Q  187 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactctt 277  Q
    |||| ||||||| ||||  | |||| ||||||||||||||||||   ||| ||||||| || ||||| ||  |||||||||||||||||||    
T  15349108 tttgtttgtttttcaagttgattttagtggaaaaaccctatttttcatcttttaacccatacgtaataatatactataaatagagactctt 15349198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 15369135 - 15369209
Alignment:
Q  218 aaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 292  Q
    |||||||||||||   ||| ||||||| || ||||| |||||||||||||||||| |||||| ||| ||| ||||    
T  15369135 aaaaccctatttttcatcttttaacccatacgtaatgatgcactataaatagagattcttgcgcacacttttatt 15369209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 15575137 - 15575175
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  15575137 gaagacaatacaaagtgaagaaaattcatttcaagttcc 15575175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 9725712 - 9725671
Alignment:
Q  369 ttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    |||| ||| |||||||||||||||||||||||| ||||||||    
T  9725712 ttctttcttgggtatgtttttctattgttttgttatgatgtc 9725671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 15375857 - 15375920
Alignment:
Q  216 gaaaaaccct-attttcactctcttaacccctaagtaatcatgcactataaatagagactcttgc 279  Q
    |||||||||| ||||||| ||| ||||| | || ||||| |||||||||||||||||||||||||    
T  15375857 gaaaaacccttattttca-tcttttaactcatacgtaatgatgcactataaatagagactcttgc 15375920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 17860016 - 17859976
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  17860016 ttctctggttctctatatggtatgtttttctattgttttgt 17859976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 17860348 - 17860312
Alignment:
Q  41 agacaatacaaagtgaagaaacttcatttgaagttcc 77  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  17860348 agacaatacaaagtgaagaaaattcatttcaagttcc 17860312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 19670143 - 19670103
Alignment:
Q  367 tgttctctctagggtatgtttttctattgttttgtgatgat 407  Q
    ||||||||||||||||||||||| |||| |||||| |||||    
T  19670143 tgttctctctagggtatgtttttatattattttgttatgat 19670103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 404
Target Start/End: Complemental strand, 11355 - 11159
Alignment:
Q  208 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 306  Q
    |||||||  ||||||| |||||| | |||  ||| || |||||||| ||| ||||||||||||||| |||||||||| || |||| ||||| ||| || |    
T  11355 ttttggttaaaaaaccttatttttattcttgtaatccttaagtaatgatgtactataaatagagacacttgcacacttttttattcattcaaaaagcttg 11256  T
Q  307 tggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgat 404  Q
    | ||||||||||||||| |||| || ||||||||||||  || ||| | |||| | ||| ||||||||||| ||||| ||||||||||||||||||||    
T  11255 tagtacaaggcaagggttaagc-ttcagagcttcaaggcagatgattttcatcctcctcatgttctctctaaggtatatttttctattgttttgtgat 11159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 11599 - 11548
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 91  Q
    ||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||    
T  11599 gaagacaatacaaagtgaagaaaattcatttcaag-tccaaggcattgcaaga 11548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 401
Target Start/End: Complemental strand, 8393 - 8226
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    |||||| | ||||||||||| ||   |||||||||||||| |||||| ||  || |||| ||||||||| ||| || ||||| ||||||||||||||| |    
T  8393 tctctttaaccctaagtaataatatgctataaatagagacccttgcagacatttttattcattcagaaagctaatgttacaacgcaagggtcaagcatca 8294  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
     ||| | |||||  |||||| |||||| | |||||||||||||||| ||||||||||||||||||||||    
T  8293 -gagttccaaggtagaggatatccatcctcctcttgttctctctagtgtatgtttttctattgttttgt 8226  T

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Target: scaffold0386; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 401
Target Start/End: Complemental strand, 11423 - 11256
Alignment:
Q  234 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 332  Q
    ||||||||  |||||||||| ||   |||||||||||||| ||||||||   || |||| ||||||||| |||  | ||||||||||||||||||||| |    
T  11423 tctcttaaatcctaagtaataatatgctataaatagagacccttgcacatatttttattcattcagaaagctaacgttacaaggcaagggtcaagcatca 11324  T
Q  333 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    | || | |||||  |||||| |||||| | |||||||||||||||| ||||||||||||||||||||||    
T  11323 a-agttccaaggtagaggatatccatcctcctcttgttctctctagtgtatgtttttctattgttttgt 11256  T

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Target: scaffold0011 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 228088 - 227969
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 138  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||  ||||||||  ||||||| ||||||||| ||| ||||| ||||| |    
T  228088 gaagacaatacaaagtgaagaaaattcatttcaagttccaagacattgcaagacggaagaacgggtgaaaaagggtcgaaaattgctgaattcgcgcagg 227989  T
Q  139 aggggatgcctcatgcgccc 158  Q
    || || || |||| ||||||    
T  227988 agaggctgtctcaagcgccc 227969  T

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Target: scaffold0011; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 227905 - 227818
Alignment:
Q  150 catgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctc 237  Q
    |||| ||||||| ||||||||||   |||||||| ||||| ||||||||||||||  |||||||| |||||||| |||||||||||||    
T  227905 catgagccccacacatggacacaaccaggaagtgctgttttcttgttttccaagctatttttggttgaaaaaccatattttcactctc 227818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 227747 - 227694
Alignment:
Q  348 aggatctccatcattctcttgttctctctagggtatgtttttctattgttttgt 401  Q
    |||||||||||| | |||||||||||||||| ||||||||||| ||||||||||    
T  227747 aggatctccatcctcctcttgttctctctagagtatgtttttcaattgttttgt 227694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 409
Target Start/End: Complemental strand, 5316 - 5223
Alignment:
Q  312 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgttttgtgatgatgt 409  Q
    ||||||||||||||||||| | |||||||||||   ||||| ||  |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  5316 caaggcaagggtcaagcatca-gagcttcaaggc--aggatttct-tcattctcttgttctctctaggatatgtttttctattgttttgttatgatgt 5223  T

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Target: scaffold1149 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 2000 - 2080
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaa 119  Q
    |||||||||||||||| |||||| ||||||| ||||||||| || | |||||| |||||||||  ||||||| ||||||||    
T  2000 gaagacaatacaaagtaaagaaaattcatttcaagttccaatactttgcaagacagaagaacgggtgaaaaagggtcgaaa 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 2246 - 2301
Alignment:
Q  224 ctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcac 281  Q
    ||||||| |||| |||||||||||||||||  |||||  |||||||||||||||||||    
T  2246 ctatttttactcccttaacccctaagtaatattgcac--taaatagagactcttgcac 2301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 2713 - 2804
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 130  Q
    |||||||||||| ||||||||||  |||||| | ||||||||| |   |||||||||||||| || |||||| || ||||||||||| ||||    
T  2713 gaagacaatacagagtgaagaaaactcatttcatgttccaagataggtcaagatagaagaacactcgaaaaagggacgaaaactgcaaaatt 2804  T

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Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 8236 - 8273
Alignment:
Q  361 ttctcttgttctctctagggtatgtttttctattgttt 398  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8236 ttctcttgttctctctagggtatttttttctattgttt 8273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 37568 - 37609
Alignment:
Q  365 cttgttctctctagggtatgtttttctattgttttgtgatga 406  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  37568 cttgttctctctagggtatgtttttcaattgttttgtaatga 37609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 33275 - 33231
Alignment:
Q  366 ttgttctctctagggtatgtttttctattgttttgtgatgatgtc 410  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||    
T  33275 ttgttctctctagagtatctttttctattgttttgtaatgatgtc 33231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 2824 - 2886
Alignment:
Q  42 gacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgctt 104  Q
    |||||||||||||||||||| ||||||| ||| ||||||  ||| ||||| | ||||||||||    
T  2824 gacaatacaaagtgaagaaaattcatttaaagatccaaggtatcacaagacaaaagaacgctt 2886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 58963 - 59038
Alignment:
Q  39 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtc 115  Q
    ||||||||| |||| |||||||| ||||||| ||||||||||  ||| |||||   |||||||||||||||| ||||    
T  58963 gaagacaatgcaaaatgaagaaa-ttcatttaaagttccaaggtatcacaagacgaaagaacgcttgaaaaagggtc 59038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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