View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2842_low_9 (Length: 230)
Name: NF2842_low_9
Description: NF2842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2842_low_9 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr5 (10 HSPs) |
| |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] scaffold0482 (1 HSPs) |
| |
|
| [»] scaffold0040 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (8 HSPs) |
| |
|
| [»] scaffold0001 (1 HSPs) |
| |
|
| [»] scaffold0233 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: scaffold0028 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 95140 - 94918
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
95140 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
95041 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
95040 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
94941 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
94940 |
cccttggtcaccaagacactcct |
94918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 104581 - 104359
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
104581 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
104482 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
104481 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
104382 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
104381 |
cccttggtcaccaagacactcct |
104359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 7592485 - 7592707
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7592485 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
7592584 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7592585 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
7592684 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
7592685 |
cccttggtcaccaagacactcct |
7592707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 15172798 - 15173020
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15172798 |
gacatcatcagaagtgagcagcaagttatacagctcattatagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
15172897 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15172898 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
15172997 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15172998 |
cccttgatcaccaagacactcct |
15173020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 4119133 - 4118911
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4119133 |
gacatcatcagaagtgagcaacaagttatacagctcattaaagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
4119034 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4119033 |
agaacattctgagaacgttttggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
4118934 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4118933 |
cccttgatcaccaagacactcct |
4118911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 15202224 - 15202446
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
15202224 |
gacatcatcagaagtgggcagcaagttatacaactcattacagctggttatctcatgcgcaagcaaagcaacagtgcttttaaagccagacaaatcagaa |
15202323 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15202324 |
agaacattcatagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacaactctattttct |
15202423 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15202424 |
cccttgatcaccaagacactcct |
15202446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 18420031 - 18420253
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18420031 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
18420130 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18420131 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
18420230 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
18420231 |
cccttggtcaccaagacactcct |
18420253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 23896325 - 23896103
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23896325 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
23896226 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
23896225 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacaactatcaaaaacgtgtccaacagctctattttct |
23896126 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23896125 |
cccttgatcaccaagacactcct |
23896103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 14101770 - 14101892
Alignment:
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| ||||| | |||||| ||||||||| |||||||||||| |||||||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
14101770 |
agaacattctgagaacgttcttcccgttttaatgaagaaaagtgaaatcaattgaagctttggacagctgccaaaaacgtatccaacaactctattttca |
14101869 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
14101870 |
ctcttgatcaccaaggcactcct |
14101892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 12173040 - 12173129
Alignment:
| Q |
139 |
aagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacactcc |
229 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| | |||| ||||| | | |||||| |||||||||| | || |||||||| ||||||| |
|
|
| T |
12173040 |
aagaagaaaagtgaaatcaattgaaactttggatatctat-aaaaatgtgcccaacaactctattttcatagtttatcaccaacacactcc |
12173129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 24412307 - 24412529
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24412307 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
24412406 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24412407 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
24412506 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
24412507 |
cccttggtcaccaagacactcct |
24412529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 30445538 - 30445316
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445538 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
30445439 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30445438 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
30445339 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
30445338 |
cccttggtcaccaagacactcct |
30445316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 30454910 - 30454688
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454910 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
30454811 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30454810 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
30454711 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
30454710 |
cccttggtcaccaagacactcct |
30454688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 30459968 - 30459746
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459968 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
30459869 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30459868 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
30459769 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
30459768 |
cccttggtcaccaagacactcct |
30459746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 18568517 - 18568739
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18568517 |
gacatcatcagaagtggactgcaagttacacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
18568616 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18568617 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
18568716 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
18568717 |
cccttggtcaccaagacactcct |
18568739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 22488686 - 22488887
Alignment:
| Q |
28 |
gcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaaggttc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
22488686 |
gcaagttatacagctcattacagctggttatctcatgtgcaagcaa-gcaacagtgctttcaaagccaggcaaatcagaaagaacattctgagaacgttc |
22488784 |
T |
|
| Q |
128 |
tgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacact |
227 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22488785 |
tggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttctcccttgatcaccaagacact |
22488884 |
T |
|
| Q |
228 |
cct |
230 |
Q |
| |
|
||| |
|
|
| T |
22488885 |
cct |
22488887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 24421767 - 24421978
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24421767 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
24421866 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
24421867 |
agaaca-----------ttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccagcagctctattttct |
24421955 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
24421956 |
cccttggtcaccaagacactcct |
24421978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 4635442 - 4635663
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| |||| || ||||||||||| ||||||||| |||||| ||||| |||||||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
4635442 |
gacatcatcagcagtgcgcaacaagttatacaactcattacaactggttctctcacgcgcaagcaa-gcaatagtgctttcaaagccaggcaaatcagaa |
4635540 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
4635541 |
agaacattttgagaacattctagctattttaaagaagaaaagaaaaatcaattgagactttggacaactatcaaaaacgcatccaacagctctattttct |
4635640 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4635641 |
cccttgatcaccaagacactcct |
4635663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 24278987 - 24278817
Alignment:
| Q |
37 |
acagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaaggttctgactattt |
136 |
Q |
| |
|
|||| |||||||| ||||| |||||||| ||||||| |||||| ||| |||||| |||||||||||| | |||||| |||||| |||||| |||||| |
|
|
| T |
24278987 |
acagttcattacaactggtactctcatgcacaagcaa-gcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tgagaacgttctggctattt |
24278890 |
T |
|
| Q |
137 |
t-aaagaagaaaagagaaatcaattgagactttggacagctatca-aaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
| ||||||||| ||||||||||| ||||| ||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
24278889 |
ttaaagaagaagagagaaatcaactgagattttggacagctatcaaaaaacgtgtccaacaactctattttct |
24278817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 24383227 - 24383397
Alignment:
| Q |
37 |
acagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaaggttctgactattt |
136 |
Q |
| |
|
|||| |||||||| ||||| |||||||| ||||||| |||||| ||| |||||| |||||||||||| | |||||| |||||| |||||| |||||| |
|
|
| T |
24383227 |
acagttcattacaactggtactctcatgcacaagcaa-gcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tgagaacgttctggctattt |
24383324 |
T |
|
| Q |
137 |
t-aaagaagaaaagagaaatcaattgagactttggacagctatc-aaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
| ||||||||| ||||||||||| ||||| |||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
24383325 |
ttaaagaagaagagagaaatcaactgagattttggacagctatcaaaaaacgtgtccaacaactctattttct |
24383397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 3242996 - 3242774
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3242996 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
3242897 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3242896 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
3242797 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
3242796 |
cccttggtcaccaagacactcct |
3242774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 3917545 - 3917767
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3917545 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
3917644 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3917645 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
3917744 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
3917745 |
cccttggtcaccaagacactcct |
3917767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 26811987 - 26812209
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26811987 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
26812086 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26812087 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
26812186 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
26812187 |
cccttggtcaccaagacactcct |
26812209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 26821454 - 26821676
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26821454 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
26821553 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26821554 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
26821653 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
26821654 |
cccttggtcaccaagacactcct |
26821676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 54690622 - 54690400
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54690622 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
54690523 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54690522 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
54690423 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
54690422 |
cccttggtcaccaagacactcct |
54690400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 54700053 - 54699831
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54700053 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
54699954 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54699953 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
54699854 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
54699853 |
cccttggtcaccaagacactcct |
54699831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 37058566 - 37058788
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
37058566 |
gacatcatcagaagtgggcacaaagttatacagctcattacagctggttatctcatgcgcaagcaaaacaacagtgctttcaaagccaggcaaatcagaa |
37058665 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
37058666 |
agaacattttgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacaactctattttct |
37058765 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37058766 |
cccttgatcaccaagacactcct |
37058788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 15843605 - 15843384
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15843605 |
gacatcatcagcattgggcagcaaattatacagctcattacagctggttatctcatgcgcaagcaa-gcaacagtgctttcaaagccaggcaaatcagaa |
15843507 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
|||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
15843506 |
agaacattatgagaacgttatggctattttaaagaagaaaagagaaatcaattgagactttgaacagctataaaaaacgtgtccaacagctctattttct |
15843407 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15843406 |
cccttgatcaccaagacactcct |
15843384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 3012 - 3234
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3012 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
3111 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3112 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatcaaaaacgtgtccaacagctctattttct |
3211 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
3212 |
cccttggtcaccaagacactcct |
3234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 31516 - 31294
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31516 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
31417 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31416 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
31317 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
31316 |
cccttgttcaccaagacactcct |
31294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 41 - 230
Target Start/End: Original strand, 9559 - 9747
Alignment:
| Q |
41 |
ctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaaggttctgactattttaaa |
140 |
Q |
| |
|
||||||| |||||||| | ||| ||||||||| ||||||| || ||||| |||||||||||| ||||||||||||||| ||||| ||||||| || |
|
|
| T |
9559 |
ctcattatagctggttctttcactcgcaagcaa-gcaacagagcaagcaaagctaggcaaatcagacagaacattctgagaacgttctagctatttttaa |
9657 |
T |
|
| Q |
141 |
gaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||||||| | ||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
9658 |
gaagaaaagtgaaaacaaatgagactttggacagctatcaaaaatgtgtccatcaactctattttcacccttgatcaccaagacactcct |
9747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 7789787 - 7789565
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789787 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
7789688 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7789687 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatcaaaaacgtgtccaacagctctattttct |
7789588 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
7789587 |
cccttggtcaccaagacactcct |
7789565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 28352430 - 28352208
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28352430 |
gacatcatcagaagtgggctgcaagttatacaactcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28352331 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28352330 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28352231 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
28352230 |
cccttggtcaccaagacactcct |
28352208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 28368362 - 28368141
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28368362 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28368263 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28368262 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28368163 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
28368162 |
cccttggt-accaagacactcct |
28368141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 28376180 - 28375959
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28376180 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28376081 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28376080 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28375981 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
28375980 |
cccttggt-accaagacactcct |
28375959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 28384002 - 28383781
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28384002 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28383903 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28383902 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28383803 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
28383802 |
cccttggt-accaagacactcct |
28383781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 38529846 - 38529624
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| | ||||| ||||||| ||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
38529846 |
gacatcatcaacattgggcaacaagttaaacaactcattacagctggttctctcacgcgcaagcaa-gcaacagtgctttcaaagtcagacaattcagaa |
38529748 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaaga-gaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
206 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |
|
|
| T |
38529747 |
agaacattctgagaacggtctggctattttaaagaagaaaaaaagaaatcaattgagactttggacaactataaaaaacgtgtccaacaactctattttc |
38529648 |
T |
|
| Q |
207 |
ttccttgatcaccaagacactcct |
230 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
38529647 |
tcccttgatcaccaagacactcct |
38529624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 4951164 - 4951297
Alignment:
| Q |
97 |
gcaaatcagaaagaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacag |
196 |
Q |
| |
|
|||||||||| | |||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
4951164 |
gcaaatcagacataacattatgagaacgttcttcctatttttaagaagaaaagagaaatcaattgagactttagacagttatcaaaaacgtgtccaacaa |
4951263 |
T |
|
| Q |
197 |
ctctattttcttccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4951264 |
ctctagtttctcccttgatcaccaagacactcct |
4951297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 7784738 - 7784646
Alignment:
| Q |
135 |
tttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacact |
227 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| |||| ||||||| |||||||| | |||||||| ||||||||||||| |||| |
|
|
| T |
7784738 |
tttaaagaagaaaagtgaaatcaattgaagctttggaaagctgccaaaaacatgtccaacaacactattttcactcttgatcaccaaggcact |
7784646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 27168983 - 27169074
Alignment:
| Q |
139 |
aagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||| ||||| |||||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
27168983 |
aagaagaaaagtgaaatcaattgaatcgttggacagctgcactaaacgtgtccaacacctctattttcactcttgatcaccaagtcactcct |
27169074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 412777 - 412999
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
412777 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaatagtgctttcaaagtcagacaaatcagaa |
412876 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
412877 |
agaacattatgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaaagagtccaacaactctattttct |
412976 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
412977 |
cccttgatcaccaagacactcct |
412999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 26812 - 26591
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
26812 |
gacatcatcagcattgggcagcaagttatacagctcattacagctgattaactcatgcgcatacaa-gcaacagtgctttcaaagccagacaaatcagaa |
26714 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||| |
|
|
| T |
26713 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggatagctatcaaaaatgtgtccaacatctctattttct |
26614 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26613 |
cccttgatcaccaagacactcct |
26591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 24023428 - 24023228
Alignment:
| Q |
29 |
caagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaaggttct |
128 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |||||| ||||| |||||||||| |||| ||||| |
|
|
| T |
24023428 |
caagttaaacagctcattacagttggttctctcacgcgcaag-aaagcaacagtgctttcaaagtaaggcaattcagacagaacattctaagaacgttct |
24023330 |
T |
|
| Q |
129 |
gactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacactc |
228 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
24023329 |
ggctattttaaagaagaaaagagaaatcaattgagactttggatagctatcaaaaacgtgtccaacaactctattttctcccttgatcactaagacactc |
24023230 |
T |
|
| Q |
229 |
ct |
230 |
Q |
| |
|
|| |
|
|
| T |
24023229 |
ct |
24023228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 31711162 - 31710952
Alignment:
| Q |
8 |
gacatcatcataagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
107 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||||| |
|
|
| T |
31711162 |
gacatcatcagcattgggcaacaagttatacagctcattacaactggttctctcacgcgcaagcaa-gcaacagtgctttcaaagccaggaaaatcagaa |
31711064 |
T |
|
| Q |
108 |
agaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
207 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
31711063 |
agaacattctgg-----------ctatttttaagaagaaaagagaaatcaattgagactttggacaactatcaaaaacgcgtccaacaactctattttct |
31710975 |
T |
|
| Q |
208 |
tccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31710974 |
cacttgatcaccaagacactcct |
31710952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 14272600 - 14272757
Alignment:
| Q |
73 |
aagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggac |
172 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||| |||||||||||| || |||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
14272600 |
aagcaacaatgctttcaaagttaggcaattcagacagaacattctgaaaacgttctggctatttataagtagaaaagagaaatcaattgagactttggac |
14272699 |
T |
|
| Q |
173 |
agctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacactcct |
230 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
14272700 |
agctatcaaaaacgtgtccaacaactctattttctcccttgatcaccaagacactcct |
14272757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 15810659 - 15810469
Alignment:
| Q |
37 |
acagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaaggttctgactattt |
136 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| |||||||||| |||||| | |||||||||| | |||||||||||| ||||| |||||| |
|
|
| T |
15810659 |
acagctcattacagctggttctctcactcgcaagcaa-gcaacagtgcaagcaaagttatgcaaatcagacataacattctgagatcattctgtctattt |
15810561 |
T |
|
| Q |
137 |
taaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgcgtccaacagctctattttcttccttgatcaccaagacactc |
228 |
Q |
| |
|
| |||||||||| |||||||||| |||||||||||||||||||||| | |||||||| |||||||| | | |||||||||||||||||| |
|
|
| T |
15810560 |
ttaagaagaaaaatgaaatcaattaggactttggacagctatcaaaaatgtgtccaacaactctatttgcaccattgatcaccaagacactc |
15810469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 41001003 - 41000864
Alignment:
| Q |
94 |
caggcaaatcagaaagaacattctgagaaggttctgactattttaaagaagaaaagagaaatcaattgagactttggacagctat---caaaaacgcgtc |
190 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||| | | ||| ||||||||||| |||||||| |||||||||||||| |||| ||||||| ||| |
|
|
| T |
41001003 |
caggcaaatcagacataacattctgagatctttctgcccaattttaagaagaaaagtgaaatcaaatgagactttggacatctataaaaaaaaacgtgtc |
41000904 |
T |
|
| Q |
191 |
caacagctctattttcttccttgatcaccaagacactcct |
230 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
41000903 |
caacatctctattttcactcttgatcaccaaggcactcct |
41000864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University